Scaffold Ga0194118_10101828

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0194118_10101828

Scaffold Ga0194118_10101828

Overview

Basic Information
Taxon OID	3300020190 Open in IMG/M
Scaffold ID	Ga0194118_10101828 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015013 Mahale N5 surface
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1761
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location Name	Tanzania: Lake Tanganyika
Coordinates	Lat. (^o)	-6.0012	Long. (^o)	29.8102	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007855	Metagenome / Metatranscriptome	343	N
F009126	Metagenome / Metatranscriptome	322	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194118_101018281	F009126	N/A	MAISVLSGSPQAATPVYNKMLFKVSGSLTSATNYRYVCDVKNAAGTTTLARLKCDKLPTTNFGFFDVSRVVETLIAPTVPTLTQAGFADHAGFYSGYRLAFMEEYGSTPVVYTGTPVNVSGNIAFAGNLEQLELADWSGGVYFPAALQQGDNPTALTTPTGRTVYGTDYGFLCAGQSGSSVI
Ga0194118_101018284	F007855	N/A	KWWIPTVFTDELTAGQLIDLMDMNTTDERQLVQNLHRIMATLCREAGWFGWFPKKYDGSAHAERAELLKTHAKVGDVWGVVSFFLLSSESYLQILSDYSKHLTKTAQSL

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