Scaffold Ga0194118_10030928

Overview

Basic Information

• Taxon OID: 3300020190
• Scaffold ID: Ga0194118_10030928
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015013 Mahale N5 surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3801
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (42.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.0012
  • Long. (^o): 29.8102
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020890	Metagenome / Metatranscriptome	221	Y
F090331	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194118_1003092811	F020890	N/A	MDSFDDIQIEDFSSFDFVEEMNEGIFEAEEEDDDKSFNTLLNSKIDF
Ga0194118_100309282	F090331	N/A	MSIGLGITIYAALVAVISSLMVYYFRVMYPRDEQQLKEKSNDRLQ