NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194118_10023332

Scaffold Ga0194118_10023332


Overview

Basic Information
Taxon OID3300020190 Open in IMG/M
Scaffold IDGa0194118_10023332 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015013 Mahale N5 surface
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4604
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (30.77%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.0012Long. (o)29.8102Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001018Metagenome / Metatranscriptome804Y
F002333Metagenome569Y
F002738Metagenome / Metatranscriptome533Y

Sequences

Protein IDFamilyRBSSequence
Ga0194118_100233322F002333N/AMSTQVQQELNAAQACIYTRTNIGRAYQDFDDTEIAGIYLRGDDCLVVRRDGSEQTYSRQLIKAAYTTYTHRLKDFFSYLGPNYRGPSVWHNNAYILFKGWNYTHALGHLTSNAKLQAHWADKFIHVSDPAKIKALLQSDQTDLGHLVAPDGLRLPNRPLDMDGELDDSQEQQPLFGEPSCSCGSFQRQLNNLSAFQEEIQGFKPWCIHLTWFNKYRELLCKRTETRNASPSGTPEKCVAWWYAPPSDHTSDGRFVLLHTKSGAQAPLSHWRTYKPQEVFTQHHAWDLFFNMMEAGYTPFPGVSLPQLKSAVKKQ
Ga0194118_100233325F002738GAGMSFDTYGLSSEQYEEFFEDNVRFAAKLYLLSCNILSAEGVGNVDFKTALDMYQEAVYATNDDCRRYQKVNNPEAIKDTDLLGIYPSREEMMEEIKAVNVKVEALVDYIARLVETTTNGLNGIAETLVD
Ga0194118_100233327F001018N/AMTQITQTKLKDLNILKLYEHYAALEKSLPLLTPESQELAKAELEACALLRSEKIDRIYYAMAAHEDALERIKKEGDLITQAKRHHESQLRSLKGLLSYLRRVLPQDSNKITGRNYQFTLVKKKELTVEISTDPEFWHTKERELYCVEETVTTTREVVLRSLSGDILNTRIEPKSTTKVLPNLDAIRDAYQTGKQLPAGVKVKQDYSVRSTRIFDTRGVDLASSEYPGELLPEADTTD
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