Scaffold Ga0194118_10002666

Overview

Basic Information

• Taxon OID: 3300020190
• Scaffold ID: Ga0194118_10002666
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015013 Mahale N5 surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22082
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (37.04%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.0012
  • Long. (^o): 29.8102
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010681	Metagenome / Metatranscriptome	300	Y
F017641	Metagenome / Metatranscriptome	239	Y
F066743	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194118_1000266613	F017641	N/A	MTSGTLTMTLLNQTTQNMVFHYVTNWKEGKVCQMFIQQITPEYQECDHKYVAIALNPVTNKSMVMSKPRSHYDTLQWVRKFCGSFSILY
Ga0194118_100026663	F066743	GGA	MKGMMSMIKNLKPLQSLSTEIMTETQAQLIRSIEQQLENLMLLNDDLAYEYECELYYDCNEDEEPQPIVENFTPELLTELENLVYQFDN
Ga0194118_1000266650	F010681	N/A	MKLRMTPKQQLWANIFSCAQQRSDIYFKENDLDRHAREHSTVMLALQKGDKFWKELL