Scaffold Ga0194118_10000347

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0194118_10000347

Scaffold Ga0194118_10000347

Overview

Basic Information
Taxon OID	3300020190 Open in IMG/M
Scaffold ID	Ga0194118_10000347 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015013 Mahale N5 surface
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	81600
Total Scaffold Genes	75 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (6.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location Name	Tanzania: Lake Tanganyika
Coordinates	Lat. (^o)	-6.0012	Long. (^o)	29.8102	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040486	Metagenome / Metatranscriptome	161	Y
F085222	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194118_100003474	F085222	N/A	MDTMYKKYINKYGNFSHILNIEIDESISEEEKNSILYDILNLIDGKNITKHISNMDISLKWRVYDNTDLLHYYTDGNGLLGDIAIYEHTKLLLNDIKKIKNSDKFNIRISKPLTKSIYIM
Ga0194118_1000034742	F040486	N/A	MSSVTEEIQQLQLRILELEKQQKEKDVIDKKHSIDHNFKVINDVLTEKKSAIKNNRYSKSVSLARYYDQELVAHLEAVYNILQIVDERLKKLEEK

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.