Scaffold Ga0181578_10046337

Overview

Basic Information

• Taxon OID: 3300020189
• Scaffold ID: Ga0181578_10046337
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071401CT metaG (spades assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2790
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → SAR324 cluster → SAR324 cluster bacterium JCVI-SC AAA005 (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F079711	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181578_100463371	F079711	N/A	ASPFMADLNVMDRRRLLVELNQLPAEIILLDLSAGCNALTLDFFNASHTGLLITRPESPSVLNLLEFLRQTIYRRLLHYLSKDRDLLNQIRNFLFRPINSVPAITMRDVLQLISAHHPNIAKTLQEDWEARQVRVVFNQVEQQEDLGFWLQVQALARDQLSCSLESWAQCPTDPSVSAALKVQTPLVQQGVSTQLLYSLQQLAKRIQNNWFGSTSKIGISTDHQDH