Scaffold Ga0163153_10043141

Overview

Basic Information

• Taxon OID: 3300020186
• Scaffold ID: Ga0163153_10043141
• Source Dataset Name: Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.MP6.IB-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3175
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat → Freshwater Microbial Mat Bacterial Communities From Lake Vanda, Mcmurdo Dry Valleys, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Lake Vanda, McMurdo Dry Valleys
• Coordinates
  • Lat. (^o): -77.5281
  • Long. (^o): 161.59
  • Depth (m): 19

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025348	Metagenome / Metatranscriptome	202	N
F066180	Metagenome / Metatranscriptome	127	Y
F095978	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0163153_100431413	F025348	GGAGG	LGNKERLKGILGRQAAAAERERVDEEAASAKAKNVKSVRAEVIQKWREQRAHLETYIAQINKETSKNGVQLFVVKNPSQAEMGSGMEVDKMEVAFRESTPHGKKLVISVRANGEAYVSISTSSETRAEQSTLHVLEVTNEQLEATVLDFLDANIPK
Ga0163153_100431414	F066180	AGGAG	MASQFPVDGNNPTLLALEQAFHDVWTVLAAHEPCRDRTEDHERRMELSRTLMVLAANGVTDLAELRRLGFRSLSLPPSN
Ga0163153_100431415	F095978	GAG	MRSPQLAESLTSSEPISTALEDGSVVEGTLGFHPSGKGRFKVSYAGKSKMEMRSYMGVEYMRSGAIILLREMADAQGMQSTPAKPTKSKSSSKKKRG