Scaffold Ga0163153_10000450

Overview

Basic Information

• Taxon OID: 3300020186
• Scaffold ID: Ga0163153_10000450
• Source Dataset Name: Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.MP6.IB-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 73497
• Total Scaffold Genes: 76
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 60 (78.95%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat → Freshwater Microbial Mat Bacterial Communities From Lake Vanda, Mcmurdo Dry Valleys, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Lake Vanda, McMurdo Dry Valleys
• Coordinates
  • Lat. (^o): -77.5281
  • Long. (^o): 161.59
  • Depth (m): 19

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022276	Metagenome / Metatranscriptome	215	Y
F056186	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0163153_1000045011	F056186	GGAGG	MTKSQAAALREKWAEGDNPSCRHLHLELEHNNNNYLTDNYHCTACGELVAANTRDPFQVI
Ga0163153_1000045055	F022276	GAGG	MSGFLALAVAIGLVFGAHKLCDLIRAPRWFAKFLFIGAFLSITYFLAKDIVPESKKPWGIWVALLGAATGIIPVGFIVFKHIDDANDRTLHDSTQSKPHK