Scaffold Ga0206131_10179381

Overview

Basic Information

• Taxon OID: 3300020185
• Scaffold ID: Ga0206131_10179381
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1067
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053312	Metagenome / Metatranscriptome	141	N
F095315	Metagenome / Metatranscriptome	105	N
F095519	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206131_101793811	F095315	GGAG	MDVKTLIMDANKHADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMTAFLAAFVIYQVIIY
Ga0206131_101793812	F053312	GGGGG	MSYKVLNDAVGLIRDETPMWEGSYQELPDKTKDGLICLWLITHPTWMDDVFPHTVSDKRLLALEAIYSEDATSRMAAAMFRDAADRNAKEVDNDAYLSEALDDFEDILDTPDFLEEIRHQLYMYLEPSMEELVMDSYQDLIYLDRLVMGSH
Ga0206131_101793813	F095519	AGGAG	MRINECCLKDIKARENKREDIAQARIFFVASMALLILLGIVGNMEYSDCINLGVC