Scaffold Ga0206131_10010263

Overview

Basic Information

• Taxon OID: 3300020185
• Scaffold ID: Ga0206131_10010263
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8797
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (18.75%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025412	Metagenome	202	Y
F027524	Metagenome	194	N
F059442	Metagenome	134	Y
F100003	Metagenome	103	N
F103288	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206131_100102631	F059442	N/A	EDRFKPYIYKVYNSRGNLEEYSRYYYTKKEALDWYNTQGKWLEKHFNRELILIDTDINLFTYVPSALLNR
Ga0206131_1001026310	F103288	N/A	MTIIIISILTILAWTSIFKQTFSTKEGFKYRYYFARTLISSVDIKPFNCAYCLSFWTGLSLSIAFMDLSYMVIFLYFAKQD
Ga0206131_1001026311	F025412	N/A	MDYRKLKWGALKSYATKLGINTKGMTKQVLLEWLDAMPDVAHGIEELTPFTGIKQEHPLFEEIKDYLPYLKAYKKLNAISRDPKVNKEIATLFLKYIEEDKNIRLNLGCGICKQRYYQRMIAGYNRLVEEHGGERI
Ga0206131_1001026313	F100003	N/A	MKIKRKHYKALQYASLIQRWRYLPSNFIFEVVQNSEVNEGMLNRNRIEQNGKRI
Ga0206131_100102639	F027524	N/A	VNESFIKEKRQVIETACKNICKHSDIWQDLSQEVNIYFLTHELPSNLNKIDGFIFVVAYKMFHLSGSSFKRLHFDNVLQESTELDYLKLKDIPYISENVYKEYLEQVKQLDEMERIWVEEIVKRNLSIKLFSDHTGIHRATAKERMESIYNKIRNNNK