NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206131_10002766

Scaffold Ga0206131_10002766


Overview

Basic Information
Taxon OID3300020185 Open in IMG/M
Scaffold IDGa0206131_10002766 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20833
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (51.52%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000983Metagenome / Metatranscriptome814Y
F008084Metagenome / Metatranscriptome339Y
F030606Metagenome / Metatranscriptome185Y

Sequences

Protein IDFamilyRBSSequence
Ga0206131_1000276618F000983N/AMKSYFILDCKNQQKIADSLYGYYTGITANKKLKNFWNNLSREEIKKYLSIPGLEINKWFEEQGLKVRDMSFTIYNEDIGTSIHKDAPPVIAKINFPVLNTVDTYNVWYDDQGNEIDRVECTKPLVLRSDINHTVEIGPNAKYPRLQFSFCFYNEPLHLLK
Ga0206131_1000276625F030606N/AMIHADEIAVCVSGLAREGYKEAIEIAQKVFPFKFFYMQWKGYPEPEVPDCEYFNEPQYDYHNLTDTQYKPDCDIWRRYASHKQAKIFRKPGAWEKTKHNSKQILAHYWLTNTIPEQYKTIIKMRYDTLMSTKVDFMLLLEQAQQGKVVGIWASTEVDDPLQIHKYKDCKRCPGPYLWDHLIFHPREKLKNVEKLFHEKNLLGAEWGWHQVLCHQWEEDNNYINAIGGNILTAHRVKK
Ga0206131_100027664F008084N/AMTALIRKIGSYHARFFAFVSMKAKTSKMWAVLLTVFVIYEIIEYTVWPILVPYLAYQHWFAN
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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