Basic Information | |
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Taxon OID | 3300020185 Open in IMG/M |
Scaffold ID | Ga0206131_10002766 Open in IMG/M |
Source Dataset Name | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 20833 |
Total Scaffold Genes | 33 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (51.52%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
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Location Name | Atlantic Ocean: North Sea, Helgoland | |||||||
Coordinates | Lat. (o) | 54.1841 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000983 | Metagenome / Metatranscriptome | 814 | Y |
F008084 | Metagenome / Metatranscriptome | 339 | Y |
F030606 | Metagenome / Metatranscriptome | 185 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0206131_1000276618 | F000983 | N/A | MKSYFILDCKNQQKIADSLYGYYTGITANKKLKNFWNNLSREEIKKYLSIPGLEINKWFEEQGLKVRDMSFTIYNEDIGTSIHKDAPPVIAKINFPVLNTVDTYNVWYDDQGNEIDRVECTKPLVLRSDINHTVEIGPNAKYPRLQFSFCFYNEPLHLLK |
Ga0206131_1000276625 | F030606 | N/A | MIHADEIAVCVSGLAREGYKEAIEIAQKVFPFKFFYMQWKGYPEPEVPDCEYFNEPQYDYHNLTDTQYKPDCDIWRRYASHKQAKIFRKPGAWEKTKHNSKQILAHYWLTNTIPEQYKTIIKMRYDTLMSTKVDFMLLLEQAQQGKVVGIWASTEVDDPLQIHKYKDCKRCPGPYLWDHLIFHPREKLKNVEKLFHEKNLLGAEWGWHQVLCHQWEEDNNYINAIGGNILTAHRVKK |
Ga0206131_100027664 | F008084 | N/A | MTALIRKIGSYHARFFAFVSMKAKTSKMWAVLLTVFVIYEIIEYTVWPILVPYLAYQHWFAN |
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