Scaffold Ga0194115_10114355

Overview

Basic Information

• Taxon OID: 3300020183
• Scaffold ID: Ga0194115_10114355
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1476
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.4446
  • Long. (^o): 29.9042
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000545	Metagenome / Metatranscriptome	1038	Y
F000645	Metagenome / Metatranscriptome	962	Y
F004115	Metagenome / Metatranscriptome	452	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194115_101143551	F000545	GGCGG	MTMKLKCIYIYFDGVSFYQSILKVDLMRSDAHPFTCSACKLVTPHIELHKYETSNIEDAPEEVWLVECQRCFVQRIIYPSDRVTSKEDDIVRCAQCGGWKMKAAKCRICRLAAGFEKISVKYWTGNATMERPYDEQAPLY
Ga0194115_101143552	F000645	GAG	MSNYLDDYVSVQDRLKEFINAYPDYRIKTHILAESLVANCDVYIIKTELYRTEADAHPWTTGLSSESKSKQYALELAETGSLGRALNLAGYFAKVSQSPKKPIETTKPALAEFIKEQRPNDPEPIVWDVSELAKELGAEVIDEMPLCPSGQCGPMVLKTGTKDGKEYRGWVCAKKNKAEQCAAKWMRIGADGHWVFQK
Ga0194115_101143553	F004115	N/A	SLDMPLSWLDADLLHQKIGTTLSLTRNHNKNQYCDYCKYRWGQNKGVWDIRATTPAIWKVQSETPLRKAQVRFYCQPCANEAQNWPDGTFYSLKEQLEDAINDFAGREKLDVKLP