NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194115_10100554

Scaffold Ga0194115_10100554


Overview

Basic Information
Taxon OID3300020183 Open in IMG/M
Scaffold IDGa0194115_10100554 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1618
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.4446Long. (o)29.9042Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001345Metagenome / Metatranscriptome718N
F012449Metagenome / Metatranscriptome280Y
F046337Metagenome / Metatranscriptome151N

Sequences

Protein IDFamilyRBSSequence
Ga0194115_101005541F012449N/AMELILPLLVSSLAALAIAEYHVLPGWWYKTWFARHKPFSCVTCLSFWIGFMFGITVFNFNAVVIFAAILYGLASAGLTVVILQLTNR
Ga0194115_101005542F001345N/AMAYASDIILDLYRSGEIRKACVTITGGDPLWRDLEQECVLILLEKDPDKILQIHGQGYFKFYVVRLLLNLYRGKNNQFAQKYRHHDTNEEIDPNADMTHEEYNSLMDDMWAIAEAEMDSWAKEGAFPYDKELLKLHMATGNMKKLSRETGIPYRSVIYSIEQAKAKIKAAILLNHGTDTTATR
Ga0194115_101005544F046337N/AMNWTRLNPETMPDKMEEVFIALHDGNYAVAWLRDNPTPTFTNIHGDVWWVHEVSHWMYPNPPKP
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