NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194115_10062566

Scaffold Ga0194115_10062566


Overview

Basic Information
Taxon OID3300020183 Open in IMG/M
Scaffold IDGa0194115_10062566 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2259
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.4446Long. (o)29.9042Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001345Metagenome / Metatranscriptome718N
F004837Metagenome / Metatranscriptome421Y
F012449Metagenome / Metatranscriptome280Y
F012656Metagenome / Metatranscriptome278N

Sequences

Protein IDFamilyRBSSequence
Ga0194115_100625663F012656GGAMMVISTLCDCIDAVDESNAPNGYAVKMKIVDKIDQLIDKIEY
Ga0194115_100625665F004837N/AMTQDEFVLAQKHRHYWEQYQAHLYMRLSPEAVYDLQTILVAHGRPNTNWWCADCVKSALQYIYQEADTFAQDNQHTVTHALTNPTKQ
Ga0194115_100625666F012449N/AMELILLLLVSSLAALAIAEYYVLPGWWYKTWLGRHKPFSCVTCLSFWLGVCLTLLTCDWMLAPVYGLASAGLTVVILQITNR
Ga0194115_100625667F001345N/AILLPMAYASDIILDLYRSGEIRKACVTITGGDPLWRDLEQECVLILLEKDPDKILQIHSQGYFKFYVVRLLLNLYRGKNNQFAQKYRHHDTNEEIDPNADMTHEEYNSLVDDMWAIAEAEMDSWAKEGAFPYDKELLKLHMATGNMKKLSRETGIPYRSVIYSIEQAKAKIKAAILLNHGTDTSAAGQ

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