Scaffold Ga0194115_10062566

Overview

Basic Information

• Taxon OID: 3300020183
• Scaffold ID: Ga0194115_10062566
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2259
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.4446
  • Long. (^o): 29.9042
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001345	Metagenome / Metatranscriptome	718	N
F004837	Metagenome / Metatranscriptome	421	Y
F012449	Metagenome / Metatranscriptome	280	Y
F012656	Metagenome / Metatranscriptome	278	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194115_100625663	F012656	GGA	MMVISTLCDCIDAVDESNAPNGYAVKMKIVDKIDQLIDKIEY
Ga0194115_100625665	F004837	N/A	MTQDEFVLAQKHRHYWEQYQAHLYMRLSPEAVYDLQTILVAHGRPNTNWWCADCVKSALQYIYQEADTFAQDNQHTVTHALTNPTKQ
Ga0194115_100625666	F012449	N/A	MELILLLLVSSLAALAIAEYYVLPGWWYKTWLGRHKPFSCVTCLSFWLGVCLTLLTCDWMLAPVYGLASAGLTVVILQITNR
Ga0194115_100625667	F001345	N/A	ILLPMAYASDIILDLYRSGEIRKACVTITGGDPLWRDLEQECVLILLEKDPDKILQIHSQGYFKFYVVRLLLNLYRGKNNQFAQKYRHHDTNEEIDPNADMTHEEYNSLVDDMWAIAEAEMDSWAKEGAFPYDKELLKLHMATGNMKKLSRETGIPYRSVIYSIEQAKAKIKAAILLNHGTDTSAAGQ