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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020183 Open in IMG/M |
| Scaffold ID | Ga0194115_10052973 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2549 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Tanzania: Lake Tanganyika | |||||||
| Coordinates | Lat. (o) | -6.4446 | Long. (o) | 29.9042 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F035220 | Metagenome / Metatranscriptome | 172 | N |
| F054788 | Metagenome / Metatranscriptome | 139 | Y |
| F060847 | Metagenome / Metatranscriptome | 132 | Y |
| F077196 | Metagenome / Metatranscriptome | 117 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0194115_100529731 | F035220 | N/A | PMVQDYYVPAGTIYLLHIPSLAWVDAKDWGFVEFEGAGPWRWLSGRDAFETTYGWYGNLACLARNAFGSITGYTDTARYTHVA |
| Ga0194115_100529733 | F060847 | GGAGG | VPVLLTSAGQPEPPTHIVARLRALHAGLHLRFLEQTGEHWAVCMDWQPEDTRWEYVQTGQTNPGSAYDIIGYLPILCSADEAPAYLERTFRQYPKDEIRNMADAVAKYNETTPVADAVNVALTEALDTPVALRSRGRPKKVR |
| Ga0194115_100529734 | F054788 | GAGG | MAISRAELVEYTREAMDAVDSTRWSDSLITSVLNVVYDDEWSNLLNASQYYTYAMRQPTTDANGVVAFSALNSGGGDSQENFYRILSVSDGNVLYTQTRFQDVPLATTTNYLPTYPRLYYIVGEQVQILPVASGTSLYVAVNYKPTALSNLLTDASTINFPLGGEWIIANEAGARLLNKGGAESGAAQVLKREAAELRAALLDDIRRRTINPTMLAYPDQKYNWGGA |
| Ga0194115_100529735 | F077196 | GGTGG | MREKVVDAQPKMDGGLNSISDDVALKPNQLRQTANARLTDYGAVTKRGGTQRTSTNALAAASVLNGFNWSKDSGSEELLAVCNGKLFTATYGSFPITWTQETGALSTATAPTFAQFRDASGVDVAFISDGGQLNKWDGTTLTTNISTTINTSVIAVHNERLWGTGNSTYPDSIFYSSLNNGTDLGDSTTPGANGGQIIVRTFGDEAIVGLASINTSLLIFHRRGIS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |