Scaffold Ga0194115_10048871

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0194115_10048871

Scaffold Ga0194115_10048871

Overview

Basic Information
Taxon OID	3300020183 Open in IMG/M
Scaffold ID	Ga0194115_10048871 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2701
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (11.11%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location Name	Tanzania: Lake Tanganyika
Coordinates	Lat. (^o)	-6.4446	Long. (^o)	29.9042	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003459	Metagenome	485	N
F011581	Metagenome / Metatranscriptome	289	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194115_100488712	F011581	AGG	MTYYQPRPAEALTNALERLMIAITNQELEQNFVTLCEYRRACDLLGYDPKKAQWAKVRAVNGSGFATDQDYTVDYYPMLNPEE
Ga0194115_100488719	F003459	N/A	MTEELVIIPKADISKADISAIATGLILRIEQEEVNPVAAHVRLKAIIKALEQVLRSTEQVVWDEAELNGRTFSAFGADIQLKEGALTPDYSVDKEWASLNSMMKGREELLKAAFRNAGKMTVIDEATGEVVPVCPAKGSKPSI

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