Basic Information | |
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Taxon OID | 3300020183 Open in IMG/M |
Scaffold ID | Ga0194115_10039391 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3166 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aminicenantes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania |
Source Dataset Sampling Location | ||||||||
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Location Name | Tanzania: Lake Tanganyika | |||||||
Coordinates | Lat. (o) | -6.4446 | Long. (o) | 29.9042 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F039024 | Metagenome | 164 | Y |
F075787 | Metagenome / Metatranscriptome | 118 | N |
F083520 | Metagenome | 112 | N |
Protein ID | Family | RBS | Sequence |
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Ga0194115_100393912 | F083520 | AGCAGG | VHSSMTLDEFLEILDSLDCEYEVYENEEENFRWIDCDLFGAEFIVFPIGPGPFFEVFSFEAIRPAELDPETMCTQFNKMQDFAKAIPFDLSDTGEYDDDDLDEECNVVIAIRRQVSIKGGVSKDFLRSTIRLWGGMLLGTEGFFEGPPVEATDGDDEN |
Ga0194115_100393913 | F039024 | AGGA | MSESKREKRVYMKPNKPATEMTEEEIRAFAEEMYDRIMGTLSEHEESDEK |
Ga0194115_100393915 | F075787 | N/A | VIKVGSVSKHELELVNRLVHHCEPEEHLAKGVLLTTKNGRRIWQVGALTTNMTVVGDDADFEGSYIVFGRFIIAAHSQCDFSDTAEITIDNNEITATVDGGTTTMIIGTKTHPLREFNEPGEVTALIPRSEYNRIFGNITTTPTGCTDWESLYEYPFSAIITITDGKVTVQSRWPKIKTAEITMSCAAETTGKGTIVLPDQAIGYMSLCIHPKNTEFIKISFAAKDPSYARFESGPVSLVVEKTNNFSTQLFERFTKYLADNSFDFQVAPDGVLVVDVEKTPIRVQLFDGIPSVARCTKVIVGDVESSPQLLTEINAMNVNRTCNRLWYDNGMVVIGSDLMVYGDLNSVQHMIEKLKRDSEGLEATFALVVNK |
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