NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194115_10039391

Scaffold Ga0194115_10039391


Overview

Basic Information
Taxon OID3300020183 Open in IMG/M
Scaffold IDGa0194115_10039391 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3166
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aminicenantes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.4446Long. (o)29.9042Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039024Metagenome164Y
F075787Metagenome / Metatranscriptome118N
F083520Metagenome112N

Sequences

Protein IDFamilyRBSSequence
Ga0194115_100393912F083520AGCAGGVHSSMTLDEFLEILDSLDCEYEVYENEEENFRWIDCDLFGAEFIVFPIGPGPFFEVFSFEAIRPAELDPETMCTQFNKMQDFAKAIPFDLSDTGEYDDDDLDEECNVVIAIRRQVSIKGGVSKDFLRSTIRLWGGMLLGTEGFFEGPPVEATDGDDEN
Ga0194115_100393913F039024AGGAMSESKREKRVYMKPNKPATEMTEEEIRAFAEEMYDRIMGTLSEHEESDEK
Ga0194115_100393915F075787N/AVIKVGSVSKHELELVNRLVHHCEPEEHLAKGVLLTTKNGRRIWQVGALTTNMTVVGDDADFEGSYIVFGRFIIAAHSQCDFSDTAEITIDNNEITATVDGGTTTMIIGTKTHPLREFNEPGEVTALIPRSEYNRIFGNITTTPTGCTDWESLYEYPFSAIITITDGKVTVQSRWPKIKTAEITMSCAAETTGKGTIVLPDQAIGYMSLCIHPKNTEFIKISFAAKDPSYARFESGPVSLVVEKTNNFSTQLFERFTKYLADNSFDFQVAPDGVLVVDVEKTPIRVQLFDGIPSVARCTKVIVGDVESSPQLLTEINAMNVNRTCNRLWYDNGMVVIGSDLMVYGDLNSVQHMIEKLKRDSEGLEATFALVVNK
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Institute for Fundamental Biomedical Research
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