NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194115_10037702

Scaffold Ga0194115_10037702


Overview

Basic Information
Taxon OID3300020183 Open in IMG/M
Scaffold IDGa0194115_10037702 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3268
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.4446Long. (o)29.9042Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001018Metagenome / Metatranscriptome804Y
F053230Metagenome141Y
F073444Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0194115_100377027F073444N/AMNCHEHAIKDFNLQLEMNDLEMNMLRDGSGDVLPYNESRMDDLEQKKLKLLLGKRFHQNAAHAYWYYLEKASK
Ga0194115_100377028F001018N/AMTQITHTKLKELNVIQLYEHYGALERSLPLLTPDSQDLAKAELEACLTLRSEKIDRIYYAMEAHEDAIERIKKEKGLILKAQKHHEGQVSSLKHLLNYLKRVLPADANKITGRNYQFTLVKKKDLTVEIKSDPQYWSSDERQQFCIEEEITTTKRIVLRSLSGEILEERIEPSSKTNILPNLDAIRNAHQSGQLLPQGVKVFQEYSIRSARIYGKSSMDLAPSEYPGDLLPEDRCSDEC
Ga0194115_100377029F053230N/AHHSMFDFILSSITSVVHDLLWTAAAALLAYTLNKIQSHFQRV
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