Scaffold Ga0194115_10017729

Overview

Basic Information

• Taxon OID: 3300020183
• Scaffold ID: Ga0194115_10017729
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5784
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.4446
  • Long. (^o): 29.9042
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001279	Metagenome	732	Y
F003213	Metagenome	500	Y
F003332	Metagenome	493	Y
F011486	Metagenome	290	Y
F014973	Metagenome / Metatranscriptome	258	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194115_100177291	F011486	N/A	MTRPYTISKQPVVTSPKAGMAKWVELCCKHSDGSLWNNGVWVVRDMRGKPGVVSNHARGLAVDLSYRWQAQQKRGRQDGRRVSKAYINKLLDNADTLGIQLVIDYAFNKSWKCDRGTWIYGNFNNGDWWHVEVDPRLANDPQAAKQAFQAVFGVSPTRPAQPV
Ga0194115_100177292	F003213	N/A	MVDKKINKKNRQIGDQTTKGGLIGLFIYFATTNNVDPALIALLVPIISSVLAWISTKIGDPDLACLFIPKDKK
Ga0194115_100177295	F003332	GGA	MPGTAVINSGNYTLEIDTGFQYNAFTLDSATKGVLDNTTFVLDGTDQFADVTDGVNIINVRRGRRDVGDQFSAGTMTFTMLDTTGVFNPFDTDSPFYDPSNDQPGLAPMRRVQLARYSDANVKEYLFKGVIVNYNYNFALGGLDTVTVYCADDFYLLAQTYMNEFNVSEQLSSARLSAVLDLPEVNYPATRDIATGTQTLGGASAFTVQQGTNVLAYCSQINEAEQGRLYISREGDLTFDSRLGSTLDPAVADFHDDGTNFKYNGVGITFEADQVTNRAVVQILGSNNPQSADNAGSQSKYFVQTYSITDSLLHNDAAALTLALYLLDPEPEARYTSLNTEMMLLTTAQKDVVATLEIGDTIAIEKTFASGAGTTELAQDLSIEGIEHTISVDRGHAITLFTAPTIVVYELILDDTTYGIMDTDNVLGT
Ga0194115_100177297	F001279	AGG	MPATTTIEVVGVKNTINSLRKIDPQLQKDFKAQATQIAQPAINAGKGVYNVVPISNFAKDWNNKTQTGTRRIKGFNVEKAKAGVKMRFDTRRNAVGVILIEQKDQAAAIFEQAGRKNPGGRLDTSLRIAGYPVQAGRTRLIGKAVYKARRGIEGEMKKMIADTMRTVQKEF
Ga0194115_100177298	F014973	GGA	MRLKLKIDLQDGAPVHEVTTNMACICEWERTENRKISDGKGIGYSDLVCWAHYLLRLAGEKLPATYREWVKANPNMTIEAVDETDPSPTA