NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194115_10017729

Scaffold Ga0194115_10017729


Overview

Basic Information
Taxon OID3300020183 Open in IMG/M
Scaffold IDGa0194115_10017729 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5784
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.4446Long. (o)29.9042Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001279Metagenome732Y
F003213Metagenome500Y
F003332Metagenome493Y
F011486Metagenome290Y
F014973Metagenome / Metatranscriptome258N

Sequences

Protein IDFamilyRBSSequence
Ga0194115_100177291F011486N/AMTRPYTISKQPVVTSPKAGMAKWVELCCKHSDGSLWNNGVWVVRDMRGKPGVVSNHARGLAVDLSYRWQAQQKRGRQDGRRVSKAYINKLLDNADTLGIQLVIDYAFNKSWKCDRGTWIYGNFNNGDWWHVEVDPRLANDPQAAKQAFQAVFGVSPTRPAQPV
Ga0194115_100177292F003213N/AMVDKKINKKNRQIGDQTTKGGLIGLFIYFATTNNVDPALIALLVPIISSVLAWISTKIGDPDLACLFIPKDKK
Ga0194115_100177295F003332GGAMPGTAVINSGNYTLEIDTGFQYNAFTLDSATKGVLDNTTFVLDGTDQFADVTDGVNIINVRRGRRDVGDQFSAGTMTFTMLDTTGVFNPFDTDSPFYDPSNDQPGLAPMRRVQLARYSDANVKEYLFKGVIVNYNYNFALGGLDTVTVYCADDFYLLAQTYMNEFNVSEQLSSARLSAVLDLPEVNYPATRDIATGTQTLGGASAFTVQQGTNVLAYCSQINEAEQGRLYISREGDLTFDSRLGSTLDPAVADFHDDGTNFKYNGVGITFEADQVTNRAVVQILGSNNPQSADNAGSQSKYFVQTYSITDSLLHNDAAALTLALYLLDPEPEARYTSLNTEMMLLTTAQKDVVATLEIGDTIAIEKTFASGAGTTELAQDLSIEGIEHTISVDRGHAITLFTAPTIVVYELILDDTTYGIMDTDNVLGT
Ga0194115_100177297F001279AGGMPATTTIEVVGVKNTINSLRKIDPQLQKDFKAQATQIAQPAINAGKGVYNVVPISNFAKDWNNKTQTGTRRIKGFNVEKAKAGVKMRFDTRRNAVGVILIEQKDQAAAIFEQAGRKNPGGRLDTSLRIAGYPVQAGRTRLIGKAVYKARRGIEGEMKKMIADTMRTVQKEF
Ga0194115_100177298F014973GGAMRLKLKIDLQDGAPVHEVTTNMACICEWERTENRKISDGKGIGYSDLVCWAHYLLRLAGEKLPATYREWVKANPNMTIEAVDETDPSPTA

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