NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194115_10007427

Scaffold Ga0194115_10007427


Overview

Basic Information
Taxon OID3300020183 Open in IMG/M
Scaffold IDGa0194115_10007427 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10869
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (40.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.4446Long. (o)29.9042Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010026Metagenome / Metatranscriptome309Y
F011666Metagenome288Y
F033013Metagenome / Metatranscriptome178Y
F056612Metagenome / Metatranscriptome137N
F079978Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0194115_1000742712F079978N/AMKLYAPEFAEMYIWATADPKSSKPSYSPSKSTTAPPNAVYGHPLGRFDSDGCYWTFVPMTGNEDPNSPLSSRFAKHPLAEQEKAQAIKEKVWGSLNSFGSYKETDF
Ga0194115_1000742714F033013N/AMAIQLTAKASSLKTVMLQLDPELYVRIKAAAKHHNIPAAVAMRQILEQGIEEVEANV
Ga0194115_1000742717F056612N/AMTDFQSAFDAKLTLFNVKEKKSEKAPDKTGSIEIELSEAMKLADYLTAHPGEEGYGGKTVIKIPVSAWDQRAPSGTEYISGKVWAKKPEPTVNDVPVF
Ga0194115_1000742723F011666N/AMEWHPIERTQESYFSEVATVKVLDEWLNNGDIKGIYNAALLLNTMLHQQRTMTKWLAGEAARNLGRPGLADEMLQNAINQSD
Ga0194115_1000742729F010026AGGMAVKAKTGAKQIQHQPGKPKRTKQGQGQHSLPSHGRKKMRGQGR

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