NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194115_10005406

Scaffold Ga0194115_10005406


Overview

Basic Information
Taxon OID3300020183 Open in IMG/M
Scaffold IDGa0194115_10005406 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13296
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (29.63%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.4446Long. (o)29.9042Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001018Metagenome / Metatranscriptome804Y
F002985Metagenome / Metatranscriptome515Y
F003601Metagenome / Metatranscriptome477Y
F073444Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0194115_100054061F003601GGCGGMANDYTDDQLLAMAMANIGEFIHDNSPHYVLIEDDPRNEEDYDTWAYGTEPLPHDHTWRSTSIEVDVSPSAPE
Ga0194115_1000540611F002985N/AMSYVIATWKGGIPYAITACSSAKQFMLVPLDSDVALNKIFSHPYRAGAQLILTWINKNDDLLANEELSIQDEARFRK
Ga0194115_1000540621F001018N/AMTQITHTKLKELNVIQLYEHYGALERSLPLLTPESQDLAKAELEACVTLRSEKIDRIYYALSAHEDSVERIKKEKALIIKAQKHHEGQVDSLKHLLNYLKRVLPADENKIKGKNYQFTLVKKKDLTVEIKTDPEFWSSEERNLYCVEEEVTTTKRIVVRSMSGEVLTERIEPATKQTVLPNLDAIRDAYKAGQLLPHGVKVFQEYGIRSSRIYGKSSMDLAPSEYPGHLLPEDRSSEEC
Ga0194115_1000540622F073444AGCAGMHCHQHAVKDFDLQIEMNELEMNMLKDNGEVLPYNETKMEDLEQKKLKLLLGKRFHQNATNAYWYYLERASK

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