Scaffold Ga0194115_10005406

Overview

Basic Information

• Taxon OID: 3300020183
• Scaffold ID: Ga0194115_10005406
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13296
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (29.63%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.4446
  • Long. (^o): 29.9042
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002985	Metagenome / Metatranscriptome	515	Y
F003601	Metagenome / Metatranscriptome	477	Y
F073444	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194115_100054061	F003601	GGCGG	MANDYTDDQLLAMAMANIGEFIHDNSPHYVLIEDDPRNEEDYDTWAYGTEPLPHDHTWRSTSIEVDVSPSAPE
Ga0194115_1000540611	F002985	N/A	MSYVIATWKGGIPYAITACSSAKQFMLVPLDSDVALNKIFSHPYRAGAQLILTWINKNDDLLANEELSIQDEARFRK
Ga0194115_1000540621	F001018	N/A	MTQITHTKLKELNVIQLYEHYGALERSLPLLTPESQDLAKAELEACVTLRSEKIDRIYYALSAHEDSVERIKKEKALIIKAQKHHEGQVDSLKHLLNYLKRVLPADENKIKGKNYQFTLVKKKDLTVEIKTDPEFWSSEERNLYCVEEEVTTTKRIVVRSMSGEVLTERIEPATKQTVLPNLDAIRDAYKAGQLLPHGVKVFQEYGIRSSRIYGKSSMDLAPSEYPGHLLPEDRSSEEC
Ga0194115_1000540622	F073444	AGCAG	MHCHQHAVKDFDLQIEMNELEMNMLKDNGEVLPYNETKMEDLEQKKLKLLLGKRFHQNATNAYWYYLERASK