Scaffold Ga0194115_10004812

Overview

Basic Information

• Taxon OID: 3300020183
• Scaffold ID: Ga0194115_10004812
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14305
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (74.19%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.4446
  • Long. (^o): 29.9042
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015731	Metagenome / Metatranscriptome	252	Y
F049630	Metagenome	146	N
F061843	Metagenome	131	N
F064712	Metagenome	128	N
F093846	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194115_1000481217	F093846	AGGGGG	MEIGIVIGAAVIALIGAYFASNLTNGTEDWAGQVKKAERSRAKMKKALTK
Ga0194115_1000481218	F061843	AGG	MSRTWSKVFRIFISNDGSYHLYLEEQEACVDLIENISDEIEVTDFAEMKKASKADLRDDFATMRLDSIRKNLPPMALKIAKLTERELLDLAQEIIQVVQDKNKIRLEIVK
Ga0194115_1000481222	F015731	AGGGGG	VNVEVDKGVADLDSNAIAWLENYKNALVKIKEWQEIADVARSHIEKTLGESEVGMYQNRPVVRWSFVETHRFDVKRAKELLPQPLLDSLQIVSTSRRFALVESDDE
Ga0194115_1000481227	F064712	GAGG	MSYLDFKIEDCKACGKLIWEGYSSAGFLTKLDTPRLSIVEEIIKKVSKIRTYEAHRTLISFEVTPRTGAYVIGSEFKSERVILAEHQCSTFTLFETEVPDYWNRNINRQADLEEIPF
Ga0194115_1000481228	F049630	GAGG	LESKYKQASRPRRDTLLMTCQICGRSTKTEGACRVCFTKVKTSLVELPDLHFEAQMFITPSRSGSGKASAERSIGVNVAALDFSLATDLLRTLHSWEVIIRSDRKLTPPALVPKEPTIDLEVQETVDFHCAHLEWSLNQEWAVEFANEVHELHAKGRSAAKRFSEQSRRIPCPTDNCKRFVVIDVENLMDDVTCFGCKQSWSVLRLIALAMSNPDRKFYLDVEAIAAWIGTTERTVYNLIKTHKVERRGSLYDLSAVVKARNSTL