NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194115_10000742

Scaffold Ga0194115_10000742


Overview

Basic Information
Taxon OID3300020183 Open in IMG/M
Scaffold IDGa0194115_10000742 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45755
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (43.40%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.4446Long. (o)29.9042Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002621Metagenome / Metatranscriptome542Y
F002843Metagenome / Metatranscriptome526Y
F028149Metagenome / Metatranscriptome192N
F034904Metagenome / Metatranscriptome173N
F036666Metagenome / Metatranscriptome169N
F042808Metagenome / Metatranscriptome157N
F072266Metagenome / Metatranscriptome121N
F090287Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0194115_100007421F002621N/ASAPSSTSSAQPHLPMCSTAKLRRIYATTLLLALPICLGCQMTKVVLVPHGDPVMLAKPVTASVYGFDKDKKLVGPSNVTLPAGWYVLPKQ
Ga0194115_1000074211F042808N/AMVAEKNRIVDGLLTAEGGVDSGFSPSLIQPNQLAWAVNTTVRGGFPKARPGIWVKNLTFPDPSVVYNNGYYNATVQQAFLQGFFQGCGTYITDAGDPYLFASIGGKVFQIDINNGFAVSDLTPIGITFQVLTRGRVSNVATYVTNGPHGLSVGMVVRLVEPPGAFFPAGFFGDFVVETVPSPTTFTTFSPGIDAGPLLGPPFNCYQLLTNNPQATHVFFQQAENWLIIQDQQSPPFLYNGSALRRATNEEVPVGGPMCYGKGRLWVANGSEYFGGDLVYSDLAYGRNSVIRFTENTFLNEGGAFAVSNGPITGLAFAANLDTALGDGDLLVFTPTATYAFNAPVDRDVWKDLDYPIQRFALLNFGSFNHESIVPVNGDLFFRAQDGIRSLIYARRDFTEFGNTPISRQVVRALAYDTEYYLTAASAVNFDNRMLMTIQPRKVNNRGIVHSGMVVMDFDLVSGMGRKIPPAWEGVWTGVDVFQMVTIRVRRTEQCFVFGLNQGNIGLYEVTKYGQFDFDGFDDAPIDWTIETRSLTFAEPANKKRLVSAEQWYDQVMGNIESKVYFKANESECWQPWAEFKDCAKYRNCEPGEISCPPAVISCQEVKYYQPPARSRIALPQPPDKCDVQTGGFTRDGYEFQLRYVNTGRFRLKRVAMVAQRLQEDLYGDLSRVACPLLSA
Ga0194115_1000074214F034904GAGMRKTLAQAKNSTIPQAVGLATCDDRFVQLLNEAQARLAEMGKWWGTYKKLRVCVTAGCITWPREVKTVETMNLCGYNIPVRNQWYEFQADERAPRTGCGREGCEQDQLLDRGMVYQYRDFTGASKIRVYPSLTADAGKRVLLQGLDAGTGQPIRTLDAVTGEYVWGEYVTLPNPAVTAYVETTNTFKVPGLTGAQKPLTQGSLTIVAYNTTTAVQTQIAIWGPSEQNPEYRRTYLINMPEVCGANGCNGGALNDCIDHGDGCVPADEACTNTVVEAIVRLEFIPAVVDSDWLFIGNLQAVKHMMKAIQKEDRNQYTEAEREIQLALRALRNELEAYSPNERSVINVQPFGSAKIEYRFGGFI
Ga0194115_1000074246F028149AGGAGMANGNVISCKQFASFLVSQEPVYDKEVLKDIRPFDGMIGYYNTGSFDAYSGTQHTFDRFNSVFPNVTTEWENPTGAACTGTPCDPDENKIGWGWTRSTYALEKQSWGSDILCFDQIMTKTKAKEHFRQIIDDVLRPATNWITTYYLQRKAMELSSYSASGISGNAFACAAGLPAVIYSWVGTGYTTLRVTDAALAPITAASLGRLTPEILQSRVTRQYFLGAIQAGKEGFDSLQLHTDKDTFRYLQKTNAALYDAWRFGDFAPAAKEFYKYGFMGFVGDFMVKVLQFPLRFNPTATAGEYTLILPYKNVAATEGIKSVFNEDYDNAHYQISYINNPRALRVLPFRPEAVNPNMPFMVRDYGGRWKFATNDLGADCSGKPIDNSRGNKGKFIADFQLAVKPEHPEWLEAIFHKVDRGCIEIIPTCEADEESYSAQDYNSADPVCLPVIQFTAIANDAGTYVIGTNGILCDGNIVTNAGISVATPALLVAALQTVWDAEFGASSGTWSVVSGNLIQLASSTLPATSEVVPCTNVTLEFSI
Ga0194115_1000074248F090287GGAGGMPALTSSEIAALSGCFDCLSPGVKESFMLVLLQQIQASSAGASLTTTSTGGLRTATAASAANSARKRFTLQNQKNEELYVKFGTAATAADFHVALAAHNPGSKHSEPLVFDGYVGAISVAPVAGNPSYTFAEFV
Ga0194115_1000074251F002843N/AMIDQTPTVQVQVNANNSLFVTTGIDYDKDGSIVGSEIVSQYTLNPGDSLEGQPSEVVKIANALWTPAVVEAYKASLPKPVVANDEPVVDPPSPIIEDPVA
Ga0194115_100007426F072266N/AMIPTPKQEFQRDKTRLQAVERMLESSELQAALLAAFNNFCWNLPPSENPQHGWNANCKRAGARAFLEELRGLVDVRELKKTPNQNLE
Ga0194115_100007428F036666N/AMLNEGFQAVARAVDRIRQTAAGARILAEWLGDGGVPVDRQLAQQRLDTCNRCLHNKPTDARSITKTVAEAILEQEQARNNMAMFLQGEGSAGTCDVCGCYLRLKVWVPLSYIDDHQMPDNCWIFQERSSR

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