Scaffold Ga0194115_10000742

Overview

Basic Information

• Taxon OID: 3300020183
• Scaffold ID: Ga0194115_10000742
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 45755
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (43.40%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.4446
  • Long. (^o): 29.9042
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002621	Metagenome / Metatranscriptome	542	Y
F002843	Metagenome / Metatranscriptome	526	Y
F028149	Metagenome / Metatranscriptome	192	N
F034904	Metagenome / Metatranscriptome	173	N
F036666	Metagenome / Metatranscriptome	169	N
F042808	Metagenome / Metatranscriptome	157	N
F072266	Metagenome / Metatranscriptome	121	N
F090287	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194115_100007421	F002621	N/A	SAPSSTSSAQPHLPMCSTAKLRRIYATTLLLALPICLGCQMTKVVLVPHGDPVMLAKPVTASVYGFDKDKKLVGPSNVTLPAGWYVLPKQ
Ga0194115_1000074211	F042808	N/A	MVAEKNRIVDGLLTAEGGVDSGFSPSLIQPNQLAWAVNTTVRGGFPKARPGIWVKNLTFPDPSVVYNNGYYNATVQQAFLQGFFQGCGTYITDAGDPYLFASIGGKVFQIDINNGFAVSDLTPIGITFQVLTRGRVSNVATYVTNGPHGLSVGMVVRLVEPPGAFFPAGFFGDFVVETVPSPTTFTTFSPGIDAGPLLGPPFNCYQLLTNNPQATHVFFQQAENWLIIQDQQSPPFLYNGSALRRATNEEVPVGGPMCYGKGRLWVANGSEYFGGDLVYSDLAYGRNSVIRFTENTFLNEGGAFAVSNGPITGLAFAANLDTALGDGDLLVFTPTATYAFNAPVDRDVWKDLDYPIQRFALLNFGSFNHESIVPVNGDLFFRAQDGIRSLIYARRDFTEFGNTPISRQVVRALAYDTEYYLTAASAVNFDNRMLMTIQPRKVNNRGIVHSGMVVMDFDLVSGMGRKIPPAWEGVWTGVDVFQMVTIRVRRTEQCFVFGLNQGNIGLYEVTKYGQFDFDGFDDAPIDWTIETRSLTFAEPANKKRLVSAEQWYDQVMGNIESKVYFKANESECWQPWAEFKDCAKYRNCEPGEISCPPAVISCQEVKYYQPPARSRIALPQPPDKCDVQTGGFTRDGYEFQLRYVNTGRFRLKRVAMVAQRLQEDLYGDLSRVACPLLSA
Ga0194115_1000074214	F034904	GAG	MRKTLAQAKNSTIPQAVGLATCDDRFVQLLNEAQARLAEMGKWWGTYKKLRVCVTAGCITWPREVKTVETMNLCGYNIPVRNQWYEFQADERAPRTGCGREGCEQDQLLDRGMVYQYRDFTGASKIRVYPSLTADAGKRVLLQGLDAGTGQPIRTLDAVTGEYVWGEYVTLPNPAVTAYVETTNTFKVPGLTGAQKPLTQGSLTIVAYNTTTAVQTQIAIWGPSEQNPEYRRTYLINMPEVCGANGCNGGALNDCIDHGDGCVPADEACTNTVVEAIVRLEFIPAVVDSDWLFIGNLQAVKHMMKAIQKEDRNQYTEAEREIQLALRALRNELEAYSPNERSVINVQPFGSAKIEYRFGGFI
Ga0194115_1000074246	F028149	AGGAG	MANGNVISCKQFASFLVSQEPVYDKEVLKDIRPFDGMIGYYNTGSFDAYSGTQHTFDRFNSVFPNVTTEWENPTGAACTGTPCDPDENKIGWGWTRSTYALEKQSWGSDILCFDQIMTKTKAKEHFRQIIDDVLRPATNWITTYYLQRKAMELSSYSASGISGNAFACAAGLPAVIYSWVGTGYTTLRVTDAALAPITAASLGRLTPEILQSRVTRQYFLGAIQAGKEGFDSLQLHTDKDTFRYLQKTNAALYDAWRFGDFAPAAKEFYKYGFMGFVGDFMVKVLQFPLRFNPTATAGEYTLILPYKNVAATEGIKSVFNEDYDNAHYQISYINNPRALRVLPFRPEAVNPNMPFMVRDYGGRWKFATNDLGADCSGKPIDNSRGNKGKFIADFQLAVKPEHPEWLEAIFHKVDRGCIEIIPTCEADEESYSAQDYNSADPVCLPVIQFTAIANDAGTYVIGTNGILCDGNIVTNAGISVATPALLVAALQTVWDAEFGASSGTWSVVSGNLIQLASSTLPATSEVVPCTNVTLEFSI
Ga0194115_1000074248	F090287	GGAGG	MPALTSSEIAALSGCFDCLSPGVKESFMLVLLQQIQASSAGASLTTTSTGGLRTATAASAANSARKRFTLQNQKNEELYVKFGTAATAADFHVALAAHNPGSKHSEPLVFDGYVGAISVAPVAGNPSYTFAEFV
Ga0194115_1000074251	F002843	N/A	MIDQTPTVQVQVNANNSLFVTTGIDYDKDGSIVGSEIVSQYTLNPGDSLEGQPSEVVKIANALWTPAVVEAYKASLPKPVVANDEPVVDPPSPIIEDPVA
Ga0194115_100007426	F072266	N/A	MIPTPKQEFQRDKTRLQAVERMLESSELQAALLAAFNNFCWNLPPSENPQHGWNANCKRAGARAFLEELRGLVDVRELKKTPNQNLE
Ga0194115_100007428	F036666	N/A	MLNEGFQAVARAVDRIRQTAAGARILAEWLGDGGVPVDRQLAQQRLDTCNRCLHNKPTDARSITKTVAEAILEQEQARNNMAMFLQGEGSAGTCDVCGCYLRLKVWVPLSYIDDHQMPDNCWIFQERSSR