Basic Information | |
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Taxon OID | 3300020183 Open in IMG/M |
Scaffold ID | Ga0194115_10000259 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 82633 |
Total Scaffold Genes | 141 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 54 (38.30%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania |
Source Dataset Sampling Location | ||||||||
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Location Name | Tanzania: Lake Tanganyika | |||||||
Coordinates | Lat. (o) | -6.4446 | Long. (o) | 29.9042 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F001165 | Metagenome / Metatranscriptome | 760 | Y |
F001190 | Metagenome / Metatranscriptome | 753 | Y |
F001806 | Metagenome / Metatranscriptome | 631 | Y |
F001807 | Metagenome / Metatranscriptome | 631 | Y |
F003687 | Metagenome / Metatranscriptome | 473 | Y |
F051883 | Metagenome / Metatranscriptome | 143 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0194115_1000025956 | F001807 | N/A | MTILSIEETTINQSHVTVTALVEDMLLLHKATYFEPDEWAPALCIADFELDEDEQIPVDEDGFCQYLADRDLQWQLVDTSDWYLAS |
Ga0194115_1000025963 | F001165 | N/A | MTALNDAPKPRIPDAIDNQRLQAMSIVAKMKESADRHGIGFVGGFVDADGNKFVMSNMSDEDTNALMPGDLQ |
Ga0194115_1000025971 | F051883 | N/A | MTYADLQTFTVVGRIASLIVIKTEDERDCLVVTLYHRISKDAVVTIKFFNSNGLLTAYTNDNLVVGQELTVSGKIQGIRAFYMKDEELMPLKQPEFQLKVTDYAFGSKPQPKAEEGTKAASKKKAATAAA |
Ga0194115_1000025973 | F003687 | N/A | MTPKAVERLLTQEARLLARRDTPIIDQEIESQRQAALEIFYQWQDGLVQFQDLVPFCVVLEKKVDLNRALLKWEQEHLVD |
Ga0194115_1000025980 | F001806 | N/A | MCEMDAGVRQQRVEALEKIKEKAMDMAKTGRDSLEVRDFVTEAKKELAYGLPDEEAFRKAVGATKAYMSKKQK |
Ga0194115_1000025990 | F001190 | N/A | MTSSVPAGQGTADDYFDINKFEQLLARLEASKGRQQRQKSLEGRRDIFSQGLASMMSNF |
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