Scaffold Ga0194115

Basic Information
Taxon OID	3300020183 Open in IMG/M
Scaffold ID	Ga0194115_10000259 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020183 Open in IMG/M

Scaffold ID

Ga0194115_10000259 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	82633
Total Scaffold Genes	141 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	54 (38.30%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

82633

Total Scaffold Genes

141 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

54 (38.30%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location Name	Tanzania: Lake Tanganyika
Coordinates	Lat. (^o)	-6.4446	Long. (^o)	29.9042	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Tanzania: Lake Tanganyika

Coordinates

Lat. (^o)

-6.4446

Long. (^o)

29.9042

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001165	Metagenome / Metatranscriptome	760	Y
F001190	Metagenome / Metatranscriptome	753	Y
F001806	Metagenome / Metatranscriptome	631	Y
F001807	Metagenome / Metatranscriptome	631	Y
F003687	Metagenome / Metatranscriptome	473	Y
F051883	Metagenome / Metatranscriptome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194115_1000025956	F001807	N/A	MTILSIEETTINQSHVTVTALVEDMLLLHKATYFEPDEWAPALCIADFELDEDEQIPVDEDGFCQYLADRDLQWQLVDTSDWYLAS
Ga0194115_1000025963	F001165	N/A	MTALNDAPKPRIPDAIDNQRLQAMSIVAKMKESADRHGIGFVGGFVDADGNKFVMSNMSDEDTNALMPGDLQ
Ga0194115_1000025971	F051883	N/A	MTYADLQTFTVVGRIASLIVIKTEDERDCLVVTLYHRISKDAVVTIKFFNSNGLLTAYTNDNLVVGQELTVSGKIQGIRAFYMKDEELMPLKQPEFQLKVTDYAFGSKPQPKAEEGTKAASKKKAATAAA
Ga0194115_1000025973	F003687	N/A	MTPKAVERLLTQEARLLARRDTPIIDQEIESQRQAALEIFYQWQDGLVQFQDLVPFCVVLEKKVDLNRALLKWEQEHLVD
Ga0194115_1000025980	F001806	N/A	MCEMDAGVRQQRVEALEKIKEKAMDMAKTGRDSLEVRDFVTEAKKELAYGLPDEEAFRKAVGATKAYMSKKQK
Ga0194115_1000025990	F001190	N/A	MTSSVPAGQGTADDYFDINKFEQLLARLEASKGRQQRQKSLEGRRDIFSQGLASMMSNF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0194115_10000259

Overview

Ecosystem & Geography

Associated Families

Sequences