NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194115_10000259

Scaffold Ga0194115_10000259


Overview

Basic Information
Taxon OID3300020183 Open in IMG/M
Scaffold IDGa0194115_10000259 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)82633
Total Scaffold Genes141 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)54 (38.30%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.4446Long. (o)29.9042Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001165Metagenome / Metatranscriptome760Y
F001190Metagenome / Metatranscriptome753Y
F001806Metagenome / Metatranscriptome631Y
F001807Metagenome / Metatranscriptome631Y
F003687Metagenome / Metatranscriptome473Y
F051883Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0194115_1000025956F001807N/AMTILSIEETTINQSHVTVTALVEDMLLLHKATYFEPDEWAPALCIADFELDEDEQIPVDEDGFCQYLADRDLQWQLVDTSDWYLAS
Ga0194115_1000025963F001165N/AMTALNDAPKPRIPDAIDNQRLQAMSIVAKMKESADRHGIGFVGGFVDADGNKFVMSNMSDEDTNALMPGDLQ
Ga0194115_1000025971F051883N/AMTYADLQTFTVVGRIASLIVIKTEDERDCLVVTLYHRISKDAVVTIKFFNSNGLLTAYTNDNLVVGQELTVSGKIQGIRAFYMKDEELMPLKQPEFQLKVTDYAFGSKPQPKAEEGTKAASKKKAATAAA
Ga0194115_1000025973F003687N/AMTPKAVERLLTQEARLLARRDTPIIDQEIESQRQAALEIFYQWQDGLVQFQDLVPFCVVLEKKVDLNRALLKWEQEHLVD
Ga0194115_1000025980F001806N/AMCEMDAGVRQQRVEALEKIKEKAMDMAKTGRDSLEVRDFVTEAKKELAYGLPDEEAFRKAVGATKAYMSKKQK
Ga0194115_1000025990F001190N/AMTSSVPAGQGTADDYFDINKFEQLLARLEASKGRQQRQKSLEGRRDIFSQGLASMMSNF

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