Scaffold Ga0206129_10009289

Overview

Basic Information

• Taxon OID: 3300020182
• Scaffold ID: Ga0206129_10009289
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160502_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9270
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042905	Metagenome / Metatranscriptome	157	N
F042906	Metagenome / Metatranscriptome	157	Y
F052547	Metagenome / Metatranscriptome	142	N
F080057	Metagenome / Metatranscriptome	115	N
F088741	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206129_1000928910	F088741	N/A	EIFAVLDDEDKYRRDMIIEFIMPIGRVEQMLNDDEYFDNVMEKVEFFKNNTPKQMDWSWTLQASNVVGKKIDKETYNKIIQKSVNEYETIVEMNPAFSRARSQLVQRRNLFGWNDFLGKVIDKDNAQETVMSMANLYCNSINFVGLTIVPGENGPTTHLNVMLHEQAFFLNNKNLDVTGLTFEEILDRKNELVTKGINRSSKVSDCNGCQFAVACASRLIFEAQETLNVDGCVLNKDVLAEYNPYDWTWNDDAMEKLGVTS
Ga0206129_100092894	F052547	GAGG	MGIVTNNRRSAQADKDFNLSFSEGHEIKVQFNCEVLSGCEFKCKGCFVNKLGSNMGSYDRLNNAIDLFNDNGYRVSTINIGPTDLFGNNNVIELLQDETFRECLSKVSTIQFVTTLTNISTEVIDLLNSIPKIDGFMYDANIALQPPVDWDWVEERLSLLNGFTDDLNYYMVYNMGNDDEYNSKVLEMSKLVEDRFDSILTLNPSFFRAPKSKVHAHLIEKWKSYDFADDLMPKTFIDQAQGGSLELNYTYCNERFFWTPFVYDIALIGTDEFQVKDENDIESWTEAKSFQFMEQLTYSSETKNCGSCPNMMTCIDKGVLSYMKHHQLTLCTFPGVIAT
Ga0206129_100092895	F080057	GAGG	MLNNDWKDIVSGGGVGEEFTSIDSMKQYKIQVNLEILEGCSYMCPGCFVKRKGNWNPRSITTFHSLAYELKDRDDIVLDDIVIGPTDFYGAQNLEEIINNLKLADAILMMPEDNRNIQHNCSILGSLSEKDIESKIKSIENSPLGKVVEAWDVQIALDLNRLMNDPEYLNALDERIETFKNSSLNFEISMATNIVQGVEDILYPAIDFVRSKYETVIEVLPSVVRSFNHSAKHGNKLFEWNDMLSRLAVDPHRFKNKFHFLQGDVSHKAFHYSVVSIYHGDMYLSPFIYENAQIHTDDFKVDDSWHWLPDADISDYILKKKDEVVVSQMEKSGDKECGSCKYLNICVNRMVPMIMDTVFDGRKECILNKDVIALFDDEVYHGNSY
Ga0206129_100092896	F042906	AGGAG	MPLIKNNLHYEMTTETQTKPVSAVKIQLDVLDGCHHKCPGCFVHRRGNSSDEHQLENAKRFIRDITDQGILVDEMLIGPTDFLASENFYEVMPHLLDIINDNSPILAFVSTLIDGDIKRFCQYITDNVNLDTEIEIGIATNPHKFFNEDYIEHVSEILNYIDKNLKHEVTYTFVVNIKDYGLDYEALHDQAVKRFDTILDFIPSVSRSHKANIILKTLDEFNEYFSTWHRESKLNNIMVDHSHAGMNYTVLNYKRGEWYLSPFMYENMAIYHDMFKVDNFNSVNVMVEQQIESAKGTECEDCPLFFSCYNRKIIMLRDYLGVDRCIAPKENMLNNIHNYNAPAQTMYQWDGYTVEKDKQGYRKKFLVTEDDDPELKRIEDISYVKQ
Ga0206129_100092897	F042905	N/A	MIVHLNSTYAGYYSYNADESPINTDFLRTEINLDILHGCSQMCPGCFIPRKNLTKADNLETLYNLLIKGAYYPDEITVGPTDIFDAENFSDIMNHPYMEKLYGISAIGFTSTLTQPYAMVKDKLAKIWSLYKNIHRVPDIDFKIVLDIDKYLDGDNDHFYKNLELFKLGSVQFRVNYHKDIFKRISYNELAQRVFDDFNAPVVITPSFLTDRNVRGKVSQHLENFRREMVEQKIDKQWLNLYTFFDAKFNGYGCQNYSFYNNKLYLNPFLYDVIIQRTPQFETTMDANTLYDNIEYAQQVDDCNGCEYMMSCAERNIHLYMESRGLGSCVALKEYMYASN