Scaffold Ga0206129_10002178

Overview

Basic Information

• Taxon OID: 3300020182
• Scaffold ID: Ga0206129_10002178
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160502_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24838
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (12.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008497	Metagenome / Metatranscriptome	332	Y
F026402	Metagenome / Metatranscriptome	198	Y
F031873	Metagenome	181	N
F060921	Metagenome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206129_1000217818	F031873	N/A	MTKKEYEVLDRWADRYDVTYKPTDSDTSFWDFTYKRNDKKYYCEMKQRNFTLDYAMEKYTEGLLLEAHKYERILRRTKNEKSAQGLYFNFFSDDKALVFNLNKIKIDKWFWRTMPETTDFTKRKFVYKYVTFLDYSKGKLFYI
Ga0206129_1000217828	F008497	N/A	MRGNVYMCLDNTTFNKLIPTELVATYGIPEYDEEGIQNGVIHPTFKELGEYNRRKFGANPMVKIGNAKFYIIELEASWLDGELSALLKLGKNKAYPKNCLMTRSEAAKFVSDNSNDIDNI
Ga0206129_1000217838	F026402	AGGA	MFQDIGKVIITRLNATSSFTTANGGSNRVFPVIIPQGVTYPSTTFEITNVSNFMSKGNSLKSCDVSIRIACFADVYLTTYSQAKAVVEALDLYEVDYTEDGVTYTAKFRFETLDDEYFKSPEKFYKNVIFNCLIIKN
Ga0206129_100021789	F060921	N/A	MMNQNQILLDRIKPMIFRLYNANESVKASKVSVTTNNYIKSFDGINYPNLSYKLHLTNGDVVTKKELAFEYNSIIESMVRHVYNNSHNTIPKV