Scaffold Ga0194134_10009859

Overview

Basic Information

• Taxon OID: 3300020179
• Scaffold ID: Ga0194134_10009859
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7666
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -4.8915
  • Long. (^o): 29.586
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080937	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194134_100098595	F080937	GGA	MSGIPSREELRKRRARATNAPVSFAINATTEKLEARNIDGQLVEEYPTGTIGRVLDAGGYELRVSFGRDDKKRLSLMLRPGPAQTQPVQVSVFSRRLILPPGTSVSAAVDRADGIVTIEPCLTGTIYYLDTEPTPLDVSADKVRLINSKNLVRIGKDLQQGKIPDEDSVDAVVQGSLETEEKQTPENNAGLAVGGWLQNATTSLMGLPNPQAPPPATVVKVSAGTPELSAPANTSVTPNADTKPVVTDRNVATTPVTQQVKVIALRSDPSDAVAPQKPFLYEEGNRRDLAKASREGLKTRPLEDPTLATPAPARTLDQKPPGDTAGNAIWRTFRSFLGMPEAATVQKEADRLSGKSQ