Scaffold Ga0194134_10003489

Overview

Basic Information

• Taxon OID: 3300020179
• Scaffold ID: Ga0194134_10003489
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16905
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (34.48%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -4.8915
  • Long. (^o): 29.586
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002621	Metagenome / Metatranscriptome	542	Y
F005024	Metagenome / Metatranscriptome	414	Y
F006107	Metagenome / Metatranscriptome	381	N
F009398	Metagenome / Metatranscriptome	318	N
F018171	Metagenome / Metatranscriptome	236	Y
F035672	Metagenome / Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194134_1000348922	F018171	N/A	MASSQGRVYRFGSPATLQLYDANNNLVIVGYVSPDMESYDLTHEADTEEVRNSAGEVVGHIGYNDRLTLTVNFIPAATSAANALLATTLPEVNGTCILTGAPQVKMGGYVDAINAATGNRWIYAGGGSLKFTQTGKVTGTITLKRFTNLSASGAATSL
Ga0194134_1000348923	F006107	N/A	MNAVALRAEKAVADYLAAADWSESGTGTPTCLTSYSRGLYDDPDLEDTMPNFPRLVVSSNSARPMQRTDLTCEVEIEVELQLSADDTDESAALSTVRILDNRILPLFDDSGASDLDAAEDDGNGPFTAQFAAPLDFGASSISNRSRTFTRNFTLYCSATT
Ga0194134_1000348924	F005024	GGGGG	MRPAVYMEVDTSRFDAALKQYLLSTQRDLHKAINARFFFLMVRLFVLVPPKSPGQERRRIANYLGTPLGDINRKSKKTGKRIGRSRLLRRVHLIAQSREAKAGRRGLYGEQMKAAASSLMRKSIASVGYLRSAVVKAIRVYNRGFTQFQSPKWKPLSKPAGYKAPKKTNAALVALANQYGLPEENVAVHKGTRARGFQAVPGYNPTATIVMTAGIADNQYNRVAGIYHPAMQRALDDETAELTNHMTEALLANGKVLEDNGFDIK
Ga0194134_1000348925	F009398	AGCAG	MTVLQQMLGAPMFIWEGSSIRCIPAAVNDANTPVAGGFQDNVASRILVKFSDWKTCDSTLVTMDSTLYTLDQGTTFSRLQREDSGFVLQENTDRIALTFCKPRPVVGRTLVYQGRTLRIMSCRVDASGAYYSLELGAKTK
Ga0194134_1000348927	F002621	N/A	MSSTAKLRRIYGMIWLVVLPICLGCQMTKVVLVPHGDPVMLAKPVTASVYGFDRDKKLVGPSNVTLPAGWYVLPKE
Ga0194134_1000348929	F035672	N/A	MNLHDTIRDLSIGIGGPAGGLLVAGIVSDPMVANISVILGSLAALTVIIRNVLEIWKNRN