NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211729_11323674

Scaffold Ga0211729_11323674


Overview

Basic Information
Taxon OID3300020172 Open in IMG/M
Scaffold IDGa0211729_11323674 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2584
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F002060Metagenome / Metatranscriptome597Y
F011938Metagenome / Metatranscriptome285Y
F013878Metagenome / Metatranscriptome267Y

Sequences

Protein IDFamilyRBSSequence
Ga0211729_113236742F002060N/AMNINYASIIIAISAAILSGMGTAIIAGIRDNKKEKIRQNEREQDHLKLEIKDLKISLYKIERDLTEWKDKYYSAIQELISVKAELEETMIKLSFIDHHIEDLEALDREF
Ga0211729_113236744F011938GGAGGVKEYYDVTHIVFIHSEQCHGTVESLGAYASIVKYKKEDGTEYSELMENEDFTIVDEIVFKHIEESN
Ga0211729_113236745F000473GAGGMFIDKSNDKLKEHFKHGINQWTGEPNKPVFYTEEMKKAVHQVKKPPMLLMDIVMYPDFLALRLYEDNFLQFEGTKKEMVIDYVSKIKKLIESYGVRCELEGKPSERVL
Ga0211729_113236747F013878AGGAMLNLTELGVEVFIKKAKNVTPYWDNYDLIIWRKDSGGFTNIKGMFKENAWGVAERIAITDNGIWKLPTKYVRNFK

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