Scaffold Ga0211729_11209352

Overview

Basic Information

• Taxon OID: 3300020172
• Scaffold ID: Ga0211729_11209352
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2564
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029755	Metagenome	187	Y
F051918	Metagenome	143	Y
F081067	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211729_112093523	F051918	GGAGG	MIDHLKDYFRLPSAKELAAKELEMAQRKLLEALSAQEYAKRMGDYHSDRIKRLTAYLKEE
Ga0211729_112093524	F029755	AGGAG	MIDYKLHYYFDDVVSYDNGTTLENVKVGYDYYPPEINMPHDYNSAEIYDVSVYNLKGDDISYDLPLSEFEHIMSETKIHHARMLKEKNEI
Ga0211729_112093525	F081067	AGGAG	MTRFTERTIRTNGKWVKITRDNKERTFTFAIGYQGEFTAREIEGTLSFKWVANWSEATDRAMRLATI