Scaffold Ga0211729_10999608

Overview

Basic Information

• Taxon OID: 3300020172
• Scaffold ID: Ga0211729_10999608
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1558
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008546	Metagenome / Metatranscriptome	331	Y
F017298	Metagenome / Metatranscriptome	241	Y
F072337	Metagenome / Metatranscriptome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211729_109996082	F017298	N/A	METNENTFTPTTFSLKRKMQWWRDKSCEGDKGGSFNLELYLDYLSEQDFNEIKQEK
Ga0211729_109996083	F008546	N/A	MKEVEWWKLLIVFFSAIVLEANSIAGFRFLMDEHWMGMVMMAGINPFLCLPMNHYTIEVKTFKGRAIIALAFSIGFVVGILTIRPFFI
Ga0211729_109996086	F072337	AGTAG	MKKYRVWLEDSVEPNGGSWWNCYLGKDGKLHDYIYTDEQADTLEWYIEHEYIVEEV