Scaffold Ga0211729

Basic Information
Taxon OID	3300020172 Open in IMG/M
Scaffold ID	Ga0211729_10816741 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020172 Open in IMG/M

Scaffold ID

Ga0211729_10816741 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

SciLifeLab

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11309
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (86.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

11309

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (86.67%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)	Depth (m)	0 to 20
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erken, Sweden

Coordinates

Lat. (^o)

59.83763399

Long. (^o)

18.6203826

Alt. (m)

Depth (m)

0 to 20

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011761	Metagenome / Metatranscriptome	287	Y
F028717	Metagenome / Metatranscriptome	190	Y
F058142	Metagenome / Metatranscriptome	135	Y
F058146	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211729_1081674111	F058142	AGGAG	MAEVTYSVLNEPTVKQSQIVAVLRRDIPTAWNIPIFDDFPSDSEVVRYGIYVSDVHTVERNPHQLGIQYCGSVYHAYDEFGITYISYQDDPYNVAVNAIIANLVTAIKDDGVQLMDGYFERDFDQVRTYGPTQAEKHTWTFRLLRMEFNTPN
Ga0211729_1081674113	F011761	AGGA	MAYVLGGPNNEGDGFTTAISNFALRAMHESNGLVNFTNVVTPTQGQTFLVPNFAPITYQDYNANGTGGTFGTGNAVVQNPALGQGTITATPAVAQTAFDIFYGWTTSFTLAATLGAELGESFAEKVDQRVTLAFQSFKATPGNTNYATSADGFTRVLQLGAMELAESGTNVTVAAGGTEGFSAASVLDLVRLVKQNFKVARMPGTPVIVLDSNGAAEGSVAGQTGSSLNRLLAELTGGAVSQSGGSNLSALGNELLASGKIESVYGCMIIFTTFLTTASRTFLGSGPFSVLVGGYMGDSAIFTVMKEGLQLKTGEVPGGLQIWLTGVGYFGSGVGDLRRGGAINIQQ
Ga0211729_1081674114	F028717	AGGA	MDNQNFVGNDVAPVTAQDSLSEAGEQNVNPGAIRKSTTQSLLTALSNASGTQFQSVEDALSYMARVGAQQTNAGNVQPSGQPKQQTNANGRVTTNDLHEQFSKLQNDLAVKEQRLREKELDSDIQRAMGDRFDSDLVDYALNKVKNNIQWNDDGTYAIVNQKGQERYGSDGMPLTISGLVQEVAVGNPKLLKQSNSNSGSGLRPGQGSFTGALDEAVPDYSRDPAAFNAWANKNGLGKGVGLKALGVSASVSTSSRKIL
Ga0211729_108167418	F058146	AGGA	MKLSQLTSKPQLIDVHLDDEATIKEFGEPIEFWTWDRQPMEVFMKLANAGNNDTSHIITIVRTLILDEKGKEILKDDEMLPTHILMKAITKVTELLGK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211729_10816741

Overview

Ecosystem & Geography

Associated Families

Sequences