Scaffold Ga0211729_10804527

Overview

Basic Information

• Taxon OID: 3300020172
• Scaffold ID: Ga0211729_10804527
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 963
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011756	Metagenome / Metatranscriptome	287	Y
F015702	Metagenome	252	Y
F029678	Metagenome	187	Y
F036551	Metagenome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211729_108045272	F036551	GAGG	LAGESMKETLEVLLSNEIRICELCGSNEWRILHQGDESNCECEGECLRVCDSTLLSDDGCDGVAILINKGESV
Ga0211729_108045273	F029678	AGGAG	MNRVNGFIIFNRETGQKMATLPLTIPIGSTVEAYEKAGHKVGWAWEEGENV
Ga0211729_108045274	F011756	GAGG	MSEPRYLMGDEYALTGGYEELINCLVCSKEYDRVEYRSDTCSDCEDEMIKRERARV
Ga0211729_108045275	F015702	GAGG	MIKEVELEYTVNNLVKLSRDKWGDNATEYLAGALDSVITYNQMKVLIDFLKAERT