Scaffold Ga0211729_10678843

Overview

Basic Information

• Taxon OID: 3300020172
• Scaffold ID: Ga0211729_10678843
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4757
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F017101	Metagenome / Metatranscriptome	242	Y
F073544	Metagenome / Metatranscriptome	120	Y
F077310	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211729_1067884311	F073544	AGG	VQEYYEVIKIVFIHAERLYGSVESLGLYASKVKYQKDGIEIEEVLENDEFTIMDEIVFEHTEESN
Ga0211729_1067884312	F000473	AGG	MEFINKDKDHFKYGINEWTGEPNKPVFYTAEMAKRIREIKKPVMSLQMDIVRYPEFLAIRLYEDNFLQYEGIKKEMVIDYVGKVKKIIESYGVRCELEGVPSARILRSN
Ga0211729_106788434	F017101	GGA	MEKRMTVLEEIIQDVSKALFQNWANALPEDQRTEENLLNLNKNATESTYFIVKMFMDKFNQAADDLKSTPDEQ
Ga0211729_106788439	F077310	N/A	MTLDANSVIIVIAASILSGIGTALVNGIKEAKREKNRRVEREQDMLKMELKDLEIKLYKLEKDLTEWRDKYYEALQELIEVKAELEDTLIKLTHIVMHE