NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211729_10477519

Scaffold Ga0211729_10477519


Overview

Basic Information
Taxon OID3300020172 Open in IMG/M
Scaffold IDGa0211729_10477519 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19560
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001530Metagenome / Metatranscriptome676Y
F002766Metagenome / Metatranscriptome531Y
F075694Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0211729_1047751913F001530N/AMQITKEFLESEIRELETEAHKAQTFLTQAQATIQAYKMLINRLEAPEPEQENGN
Ga0211729_1047751920F002766GGAMLEFAEAVLREIRKLQDQSKQIVLNGTITDMERYRYMMGRLEGLRMVEDSVKELLKKITDDDDLFK
Ga0211729_104775199F075694AGGAGMAGRGMGAATRGGGAVESGPANKMMSETSTSTGVPMMAKGGMANKGGINEHKRMAMGKPIGKMGGGMMSKGYAAGGAAKGMMAGGKRAK
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