Scaffold Ga0211729_10396380

Overview

Basic Information

• Taxon OID: 3300020172
• Scaffold ID: Ga0211729_10396380
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1477
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030667	Metagenome / Metatranscriptome	184	Y
F102506	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211729_103963801	F030667	N/A	RTSHDYKSHSSMTNKSLVPNSKDSNKLKDSESKGILMKEIRVPMRQYEDDGSNLAGFGLVEPKDAPQPKIRKSDPKTRGRRAEHEWTPMDVAAEFSYRVGRKYPLLPGTVSVKQLSGALAKFRKQYDTNALIELELLRLFMADERNFQNIGDEAPMLYKMFLSSFGKKMNQARENLGLNKINAPIDTAVKMETLQASDGRTFQNSLSGRAQLARYEKRLKENANG
Ga0211729_103963802	F102506	AGGAG	MAKKVVKTFTANLNKNLEKGGAWMAIVNVTTDGIEGSNVVNMAAWSNASAGKRWIKSQVQALTPRKSVKMIAGQGKDAKGKPASFVGVVTFKSE