NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211729_10223019

Scaffold Ga0211729_10223019


Overview

Basic Information
Taxon OID3300020172 Open in IMG/M
Scaffold IDGa0211729_10223019 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2523
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000332Metagenome / Metatranscriptome1283Y
F001538Metagenome / Metatranscriptome674Y
F004432Metagenome / Metatranscriptome438Y
F065786Metagenome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0211729_102230191F065786N/AMTKDELINLLRITGAQEASIDAVCAAYDAGWNDALDDYAKRIEPLPFGKDTIGSFGCFIKDAKK
Ga0211729_102230194F004432GGAMVTKKAPAKVAPVKRRTPRPKAEQTINVSLATPAAKPEAKKDDSALGKVIGLIEWVDNPFKLFTVILLSFLFFAGYFAWDSRQVILHAITTQDKMPQLAKQENLLSPARSLMKDLDGIVVLVHKANLSTNSRTTVLALNADGSREKAMEGTVTSLFNASADRNAAMVAMLNNEVLCEEFNPSSKVGEWGAKQGVKFMCRGSIPPDMGKFAGYVAIGFKNKPEDIAALKTRINLAATDMSE
Ga0211729_102230195F001538GAGMIESIRLFPTVQASGYPDKHDLAQAKLEKQHEVNKTVEVAKQKQTELQDIGFEIYCKKVVQERLRMEIFQNRKLDIYA
Ga0211729_102230196F000332N/ALLFGLVGAVAKNGCHVREFYGIGYTVHDPTERHFKMLAWLESNAKYCKTSDYVVMWNNLSEWAGAADSTWLRAAIIHDYKDAKEREK
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