Scaffold Ga0211729

Basic Information
Taxon OID	3300020172 Open in IMG/M
Scaffold ID	Ga0211729_10106255 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020172 Open in IMG/M

Scaffold ID

Ga0211729_10106255 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

SciLifeLab

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	31769
Total Scaffold Genes	48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (52.08%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

31769

Total Scaffold Genes

48 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

25 (52.08%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)	Depth (m)	0 to 20
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erken, Sweden

Coordinates

Lat. (^o)

59.83763399

Long. (^o)

18.6203826

Alt. (m)

Depth (m)

0 to 20

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010682	Metagenome	300	Y
F027502	Metagenome	194	Y
F048284	Metagenome	148	Y
F051095	Metagenome	144	Y
F070060	Metagenome / Metatranscriptome	123	Y
F077254	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211729_1010625515	F077254	N/A	MDPYARAGFGFAKAYQMNMQAADAQRQANAPSSSAFAQILNDEETDYNYSPQPQAPAPPSEQYTGMEPDGGSILEQSNGNSLMRAKHKVAKYLQERD
Ga0211729_1010625527	F027502	N/A	MTLNARQQQLRERDVRKLSPELNPDTFMQMYMESNFPQTAAFPSAQQMQRGLDNQQLADSLKLKQTKPKSGTGYDNPGLS
Ga0211729_1010625528	F048284	GGTGG	VFSKADYELAARILGLPVPQTPAEMAAATPATAQVIRRFGQGLPPMPGQESDGFYTGATRSLNGYPDNTMPMQKAQLASRLRTEPERPHEDAYLMELVNMLDPDEFSLIMALLERLADQEDEESDRLSSQRPLEYDTPNMGSNYSVLNAPSSNGIEPSRAYQALG
Ga0211729_1010625535	F070060	GGGGG	MTYVVVDEDDFEVIGVDDYGILVKAAWGEQSFVSSWHLVDERKIQLTRRTKPADWDAKKEARKQAVKDEG
Ga0211729_101062558	F010682	GGAG	MVYTPQTNWKYDKSLYHPIQSGPQRTGDDLDLTDTYLVVSSGYVTPLGFTQTWYGVNDQGADFGRIPVGPPNLSGYFTTEWRAVPPAVSGYWTNYENTLPHASGLLDTYVGFRAQGLYSTANATVQTAFGPRPGLRNFGTHTWYGEQIPDNQLYSPFQTPGSNDNTIDGGGITGGGVTHPTNQSPTLTNPTNDTSGSRAAWVYHYPVYCQSLTETRYTGVPGQMGSPARNSYRGKSLRYAPNYGSVYGVLGEGVRNMVRTFSPGTKI
Ga0211729_101062559	F051095	AGCAGG	MSSHIEKALTMFFEDPEASIACFSGSITESLTHPRGIKKVIPYLIKASLVGWMLATFVSPAIEERFKLTKNESIAISFIIGYAGIRILAAAERLAEKELERRVGKSDDEIS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211729_10106255

Overview

Ecosystem & Geography

Associated Families

Sequences