Scaffold Ga0180732_1006509

Overview

Basic Information

• Taxon OID: 3300020171
• Scaffold ID: Ga0180732_1006509
• Source Dataset Name: Groundwater microbial communities from the Olkiluoto Island deep subsurface site, Finland - KR11_0.1 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5068
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Groundwater Microbial Communities From Three Deep Subsurface Sites In Europe

Source Dataset Sampling Location

• Location Name: Finland: Olkiluoto Island
• Coordinates
  • Lat. (^o): 61.2413
  • Long. (^o): 21.4947
  • Depth (m): 420

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012014	Metagenome / Metatranscriptome	284	Y
F014839	Metagenome	259	Y
F082169	Metagenome	113	N
F082389	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0180732_100650911	F012014	N/A	MNLLSKEVLIGAAALGAGAVAAKVVQKKLIPMVLPTATPTISNLITLAVGIITPTIVKGSVGTGLGAGMIATSVAGLVDPYLAKAGITGYDDTYMGEVLMGETGSGDVLMGATDFAAPSNDFTGEGAGEMDY
Ga0180732_10065095	F082389	N/A	MSIVKRKNAKGKVYYFNTSTSKFASEAEYKRSKSAPLAKSKARKGKPSERVCSIFGRELKVNETTAAGRGLRKCR
Ga0180732_10065096	F014839	N/A	MMQSYSPKMTPNNDQRIAQMMANENIIISDKLMKLQVENKEMFYKFHKLKKVFYELVEHHDELRERAGLIPARYDWVEAAGLLDDAE
Ga0180732_10065097	F082169	N/A	LHLFYSKLQKTHQISTNYFFAIFDVMKFNLKSILAWGGAFVAYRLYKLYELGENIIYKPVGVSFTRGKSINDFVVRVKMELLNPTKTTLPMRGIDGKLKIKDQVVGTFTSAPFTIAAGISYFYLDFKIVPDTTGVQIITALLKKQVPVFVVEMNKRLPYFSITEVFAINPNTIETSNVMV