Scaffold Ga0181588_10066842

Overview

Basic Information

• Taxon OID: 3300020168
• Scaffold ID: Ga0181588_10066842
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071409BT metaG (spades assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2058
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001588	Metagenome / Metatranscriptome	667	Y
F009668	Metagenome / Metatranscriptome	314	Y
F020852	Metagenome / Metatranscriptome	221	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181588_100668421	F001588	N/A	MHVLVLLCMYKLTSIEGYNMQNTNYVFLNAANAAIVVTVNNVVVATDVQTADALVQVFLTHNINVLKDTIMCSSSIDFAEEEGFASDASAHNIIDEAFEALA
Ga0181588_100668422	F009668	AGGAGG	MLNGKVCLSEAVRVVWVEEDAEWKAEFEEYGYDTDMWATYYGADDEEEWRDNVYTVEVLEDETYGFMCGNTSDRRCYGFTVDVYKAEEADGSFSFWVTNEDYATIG
Ga0181588_100668423	F020852	GAGG	MLTLTNKTTETTHADEEYSCVVTRYDADGYAVCDGSSIWGYEGDNKVAVSAISVHNETYEDGDTSTMIYVEHNAGGCGDWRIYTDRGFEASISAALGFDVTFTEQGMQDDGIASLEC