Scaffold Ga0194035_1024253

Overview

Basic Information

• Taxon OID: 3300020167
• Scaffold ID: Ga0194035_1024253
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L239-20m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2268
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.663
  • Long. (^o): -93.723

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004866	Metagenome	420	Y
F005243	Metagenome / Metatranscriptome	407	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194035_10242531	F004866	GAG	MAIVNKVDLKLQVDINETIKYQILTYCFFENILISNSDLKCLMELSKQPKIELTKFCIFLTEQQIFKSPQSARNALAKAEKKKLIVKNGINKKTISINKNINVQID
Ga0194035_10242533	F005243	N/A	MAQSKTKTLLDEKEPILTKEELNARREEITAFYKDNIPHLEVQAEYEMLLATIEKSRAERLQAQMYMAQAYASQKEGGQVPVDSEEARAFKEAMENAASQID