NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206128_1024068

Scaffold Ga0206128_1024068


Overview

Basic Information
Taxon OID3300020166 Open in IMG/M
Scaffold IDGa0206128_1024068 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3379
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (6.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000352Metagenome / Metatranscriptome1247Y
F015096Metagenome / Metatranscriptome257Y
F045763Metagenome / Metatranscriptome152Y
F103255Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0206128_102406810F103255N/AMKSTADILQELSMYANLNYEDDWYLKDKINELKTRIYEQTNS
Ga0206128_102406814F015096GAGVHLYINHKDEDNMNTLTQWQARRKELEDKYVELMLAKYPLLTDVTTNTQRENGTRTFQLNHKKYGLCKFATYKSGMVRKIIRTRFKDLSCYQLNPQRSITNYYMTLGDNSELNMNSYTGKQRVKITNGLARLVYLEKYLIKNYDLDSVQDVIEVDGVLYKRI
Ga0206128_10240686F045763N/AMSLFHWSEETISHFEFMSSYLSKEQTINKIKQFVVVDCVPAEEETEEMLVEDLINIIYK
Ga0206128_10240687F000352N/AMKKIELSESDCTFVHYVLRMYASQTSGLDRSDKQEIYEVANKFK

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