Scaffold Ga0206128_1024068

Overview

Basic Information

• Taxon OID: 3300020166
• Scaffold ID: Ga0206128_1024068
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3379
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (6.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000352	Metagenome / Metatranscriptome	1247	Y
F015096	Metagenome / Metatranscriptome	257	Y
F045763	Metagenome / Metatranscriptome	152	Y
F103255	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206128_102406810	F103255	N/A	MKSTADILQELSMYANLNYEDDWYLKDKINELKTRIYEQTNS
Ga0206128_102406814	F015096	GAG	VHLYINHKDEDNMNTLTQWQARRKELEDKYVELMLAKYPLLTDVTTNTQRENGTRTFQLNHKKYGLCKFATYKSGMVRKIIRTRFKDLSCYQLNPQRSITNYYMTLGDNSELNMNSYTGKQRVKITNGLARLVYLEKYLIKNYDLDSVQDVIEVDGVLYKRI
Ga0206128_10240686	F045763	N/A	MSLFHWSEETISHFEFMSSYLSKEQTINKIKQFVVVDCVPAEEETEEMLVEDLINIIYK
Ga0206128_10240687	F000352	N/A	MKKIELSESDCTFVHYVLRMYASQTSGLDRSDKQEIYEVANKFK