NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206128_1005289

Scaffold Ga0206128_1005289


Overview

Basic Information
Taxon OID3300020166 Open in IMG/M
Scaffold IDGa0206128_1005289 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9680
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (35.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Verrucomicrobia phage P8625(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019811Metagenome / Metatranscriptome227Y
F020519Metagenome / Metatranscriptome223Y
F056427Metagenome137N
F066807Metagenome / Metatranscriptome126N

Sequences

Protein IDFamilyRBSSequence
Ga0206128_100528911F066807N/AMASYALLIGTNGDKRTLIESGQPVEIRRQFKEVTAKDGFELVEVIDKNLGRIRQRRFVKAAPAAKKAAKKSK
Ga0206128_10052892F056427N/AMTIAEEYQAERERLELNRQLDWSTFSKDYIVAGEKLKQMTVQTWFDLLALKSPMLHKEEPTLESIVDYVWRNSTRFTENYWLKEWRVFWLYRRVLKSVRKTSDGMDMIATVCEHLKSSLDEFPTDTNGSSSGNTNKISPVSGEASMVDELATRYSMNPEDVLKMPLRRAFSLQRTIRLSTIPGYKLLEADSIRAIKSKYLQSLNNG
Ga0206128_10052895F020519N/AMPATSDEEVFCFEQNFEQSFYDFLLAEGIELATANDPQRLGDDYVGVQFMVNGIAEDEHMSEKPGGNLEYDHYLFGVEITIHTDRIENAVPGAAFSRYHRELVAKVRNLLSISRAAEGASLNDQITLYWINRLVAAETNYTAYDNSYDETVLTYEGDFSILPEAWPV
Ga0206128_10052897F019811AGGVIDILAAVFIMIDNMSSFKNFAKMGITHTLRVIGEPASIGGNQFQASFEESDMDVTRHVFGDEDEVTTVAVCLKSELTNAPRIGETLIRVNERKTYVITEVQDDIESYDITMRRKDG
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