Scaffold Ga0206128_1001907

Overview

Basic Information

• Taxon OID: 3300020166
• Scaffold ID: Ga0206128_1001907
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19637
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (32.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F066807	Metagenome / Metatranscriptome	126	N
F087014	Metagenome / Metatranscriptome	110	N
F097329	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206128_100190711	F087014	N/A	MARISRKPTTRNVETAIVNHLKKNGALKGCAIVAKGDSTEAPPSLPCIIVHCPSAPRHADIIGFYARDADVSVTLYADSEQTPEAKCETYAGNMEHCLDWVDGLKKQFNKPGGGRDYRKIRGVYLHEIIDFITEYDTEGTNWQRTVNMTLVVQEIDE
Ga0206128_100190714	F066807	GGAG	LYLHNQLPRIMANYALLLGTKADKTTLIQKGQPVEIRRQFKDMTAADGFDTIEVVDKHLGQIRLRKFVKPVAKKAAKKAAKKES
Ga0206128_100190719	F097329	N/A	MAIASGFIQTLRRYGARSAKNKARMEAWLDDAIEEIAANKGSDVVSGSANGASFSSMANMTNAEWASCLDRALQMIDEGVNHTGRSYGQF