Scaffold Ga0206125_10023505

Overview

Basic Information

• Taxon OID: 3300020165
• Scaffold ID: Ga0206125_10023505
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3589
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010466	Metagenome / Metatranscriptome	303	N
F040112	Metagenome / Metatranscriptome	162	N
F063692	Metagenome / Metatranscriptome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_100235053	F010466	N/A	MRKLSFVVVFLFVQLNVFAQSAELEVGYDLAQEMLQWEELNPTHKAESDRYLKSMNYAFGFNGPDIEEVYHLLSDVDGSIPTMIEDSYDGRRKTWRATSVFVSLALYSEGEKRMFYLDMANHIAKGWYTYYQTYAAVLLLEYVESIGSGGVEKRRSMLLAYVQAYEEEVGIEFAERIYAFLGEN
Ga0206125_100235054	F063692	AGGAG	MKKLVAVVFVLITLVVMVLFSRARDKEQRLVNDRYKVACDFYFSGVVVDVANDFDVHRCMLRLELDTSTIANFDVRDTTAYYHAVIEGTDAEVIESIIYDHSESGQANFIKSAMRYTFDGQVDSAYLNFADTLVESWPIQISTFDLMDVARFHQIPMAEGKTAVQRKRGWWPRVR
Ga0206125_100235055	F040112	AGG	MRSVTTYLIIVLLFLLGSCVREPLIGEVFDIAELQSEFELVTLKSGKEEGFLEPLMKFEVYQTTEQSFKQIQDHLSGYLKRIEPGYYLNNEFDDFLMENGLKVLNANSSMISSNPFDDHYRVYFLSDSQTIAVLWINSN