Scaffold Ga0206125_10013868

Overview

Basic Information

• Taxon OID: 3300020165
• Scaffold ID: Ga0206125_10013868
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5329
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002747	Metagenome / Metatranscriptome	533	Y
F006347	Metagenome / Metatranscriptome	375	Y
F024562	Metagenome / Metatranscriptome	205	N
F042284	Metagenome / Metatranscriptome	158	Y
F086185	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_1001386810	F086185	GGAG	MMEPDMITLDDLLEILSTDLTPTEIEAFLFEWGVA
Ga0206125_1001386816	F042284	AGGA	MSLASGILFMIWCSIVFFAIGGWAFMTIMKQDKSIYQDWDDDDGFHDEVG
Ga0206125_100138687	F006347	AGGAG	MIDRIEQLITTLEQEINDGYNTLPDYQANNEGKTYVNSAQCTLNELQNQVTELKQGLEQGKNFSLLGENV
Ga0206125_100138688	F002747	GGAG	MAKDQRYFVDVCLEIYVPDQGCGDNALINESKDANWFANEICSQIPKAINKNFKYSERPYSVNDATFVKQQRG
Ga0206125_100138689	F024562	GAGG	MAIIYEKNFTDPNEKIVRQFTNCCGASDKGTEFGVVCRGCYDPIEGYVTDGDDSPKEFENYIHNDSVLKRFRTFVNENFLNYEQWHEHIINKMGV