NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206125_10010465

Scaffold Ga0206125_10010465


Overview

Basic Information
Taxon OID3300020165 Open in IMG/M
Scaffold IDGa0206125_10010465 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6601
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008782Metagenome / Metatranscriptome328Y
F009300Metagenome320Y
F016596Metagenome / Metatranscriptome246Y
F018080Metagenome237Y
F024889Metagenome204Y
F025613Metagenome201Y
F063168Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0206125_1001046514F009300N/AMIKWKKTTYPSTFIKLSDELAKVRSMLSADVYNKNTEKYRGNQEHSISQLGIFAELIARHLMENNNGIKYKAALLLESRPVVEADLIMEGIGEIHYIDVKGVRSGGDTLRVNFKAHNNPKKKITHYLFIQPLNALYARFCWFTHKQVSEWTVVMSTYTECYELEIPKNN
Ga0206125_1001046517F016596N/AMTNKYSLVQIRESRNEFEALLRIYGVSNLKLCKILGVNYATSRKFIENPPSLRFIHAKTLADFIGLKTQDIVDTIMYDLN
Ga0206125_1001046518F018080N/AMKTDMKKTQENNGKKCAKMEYLDIEIFNHFLKSYTYIIWNKKHLLGEIAEDDILKLLDEIQLIDFYHLDKTKFKVEKSKVEKYINRDDK
Ga0206125_100104652F063168N/AMDTHVNKDPLNPINHEPKTNYCNICDIEESKTYFVDDSGICEDCYYSCCGDELNQDVRICPTCLEHN
Ga0206125_100104653F025613N/AMNKYKITNLTSSKTYFLNEEEKEKFFKKNKLQNYNITNLTEQKRIKRNKILDTIQLTTLFFAIIITVVLIIENNY
Ga0206125_100104657F008782N/AMKKPIFRVFVSYEIKSKKVVTRKVITGILDTFVLTSNIKEIENDQELIDRICYINKKKLNKVDVIITSVDIENQYGETTDRFEDEY
Ga0206125_100104659F024889N/AMNSVTIGALMIVGVVILYIFALCYVEGKIAKQENDRLENNIDKLDDKA
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Institute for Fundamental Biomedical Research
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