Scaffold Ga0206125_10008160

Overview

Basic Information

• Taxon OID: 3300020165
• Scaffold ID: Ga0206125_10008160
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7974
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002507	Metagenome	553	Y
F020260	Metagenome	225	Y
F032820	Metagenome	179	Y
F033993	Metagenome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_1000816011	F002507	N/A	MTYYLLLNGDTEKDVIYETNVLGEESFGVFYPSIGFNIMSKIINDRPELLEDIKILDDHKTSHSITEFLDKLDKWRIKKA
Ga0206125_100081602	F033993	GAG	MRVILITALIWNACTTLPQTERKTIPIVDKNNEIHIYRSSNPLQLGRDYALYCMEHHHWETISVRYTPTPLAKLRHEEYVVRRHPKDS
Ga0206125_100081606	F020260	GGAG	VKDRIPELEKLMVEMTEEAISVKLDYQVSGSNMDSGSIVAIHHNSTLLDNETEQLSDVAINIKRKENDK
Ga0206125_100081609	F032820	AGGAG	MKYVLIDSNNDVVDTIDSITEGSAENYFMKRKQMKDTESFYKVWKIKTKKEHDLNQEAFTRKPSSENWWKEDTYLDIDKP