Scaffold Ga0206125_10003461

Overview

Basic Information

• Taxon OID: 3300020165
• Scaffold ID: Ga0206125_10003461
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15115
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026281	Metagenome / Metatranscriptome	198	Y
F057283	Metagenome / Metatranscriptome	136	N
F082524	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_1000346121	F026281	GGAG	MRNDMKYLISAIVAMSVAAPAIAQDAAGNDALMSNATVGVSTDLEGNADWTVGAELGVAGFGVDAGFTLKDRGDNTADDYSVGVGTGMDLGLASLDTSINYAWGASGGDLIGRGDGNTWGDLTVDPTLKMTPGIIGGEYAWVGASMNLASAGEVDLGWGGASYGVGYSHDLNERASIGISYGWSVDVVDDNDDTTVNDWTTTADGLKVGVGFKF
Ga0206125_1000346129	F057283	AGG	MATNAERMDRIETKIDKLSEVLVHMARVEEKLINQEEDHKILRKDIYNLYDKVSEMEKIVQKNQITVNIINRISWIIITGVVGGFGTLITYLFNK
Ga0206125_100034616	F082524	AGGAG	VAKVLISEYWIQDNGGIVRVYKNGSAYELVAEEDDGTVFLHSKNIPRLETAENRAEEIALLV