Scaffold Ga0206125_10003134

Overview

Basic Information

• Taxon OID: 3300020165
• Scaffold ID: Ga0206125_10003134
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16408
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (52.17%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017050	Metagenome / Metatranscriptome	243	N
F018269	Metagenome	236	N
F105168	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_1000313411	F017050	N/A	MSKLISGYWWAWKEIEAGKKSMQTLRKFYPDSDLFINVDYEGDVDGYTKVGEELGATVTRNNFQLGYCGNFGNRDIGYDYWSKEKAVEWLTGVYNACKKTDSKYMMLFEEDDFVLKNISILDTEFSMAIHPTAPSPVRMRPNNIPHKFLEYSKSINGIGDCPGYASGGGTIFNREQYIDSYEKILDKFTDVYDEFCKINKIFGWQDFMFQYIMMLGGYEITQNHDLCELWEVPNFEGFEILTGCKDPNLVEL
Ga0206125_1000313413	F018269	GGTGG	MKIGINLVGVSYNNAITGGRLRNYEDAIENFFKYIIEPFRENGNEVQFYLYSYENEKQDKIVDDYTPCIKSQFVKPDYNKLGGGTKVSEGYKVMSVSYLNSLEQLKNQDLDLIISTRYDIKFLKNPFEEYNFDFDKMNFLWREPELKDLPIVNDTFLVFPYKMLDNVIDSIIEMEENPPQGKNIAMHNWYLPMVNQVGEDKVQWVDDEFRTALQNELYILTRKG
Ga0206125_100031342	F105168	GGAG	MNVLLEIWKDKLSDYVIMDYILKIWVTGLLVMVVLGLGAIISHIIMNPSAIDNATFGIFDTLGS